Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1048 ATGATCTTTGAGATGTGGGGAGATAATGGAGTTCCTGCTGATTCTTTCTATCAAATTCGCCCTGAGTGCATCAACGATGTTCCCGTTTCAAGATTTAAGATCAAGCCCGGTAAAACACTGAGTCCAAGAAAATGGCATGCTGCTTTTACTGAAGAAGGATATCTGGATATAGGAAAGATTCTAAGGCGAATCTACAGAGGGGGAATCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGTTATGATCCAAAGAGTACATTTGATGAACGAGAACAAATAAGACAGCGTCGTAGGTTAGAATATGCTAGATGGAAGGAAGAATGTCGCCAAATGTTTCCTTTTGTTGGAAGTGGTAGATATATTTCATCTCCTGTAATTACCGATGATGGTCAACCGATTCAAGATCCATCAGTTCTTCTGGAATCAAATCCAGACAAGGGATTGGTTTTAGTTCCTCAAGATAATTATAGGTCTTCAAGCATAGATGCCAGAAATAATTTAGAAAAGGTGACAGACAAGAGAGTAATCCAGTGGCTGTTAACTCTTCATCAAATAGGTCTTGACGTGATTCGCACTGATAGGACATTGGTCTTTTATGAGAAGCAAGAGAACTTGTCAAAATTATGGGATATTCTTGCAGTTTATGCTTGGCTAGATAAAGATGTTGGCTATGGTCAAGGGATGAGTGACCTATGCTCACCTATGATAATTCTTCTTGAGGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTAATGCGCAGACTTCGAGGTAATTTCAAGTGCACTGATCGTTCTGTTGGAGTGGAGACTCAACTAAGTAACTTGGCTTCAATTACTCAAGTATTAGATCCAAAACTTCATAAACATTTAGAGCAACTAGGTGGAGGTGATTATCTGTTTGCTTTTCGGATGCTAATGGTTCAGTTTCGTCGAGAATTTTCCTTTTGTGATTCACTATACCTTTGGGAGATGATGTGGGCTCTAGAGTATGATCCTGATTTGTTTTGGATGTACGAGGATGCTCAGAGAGCTCCTACAAGCGCCGAGAGCTCTAGAGGGAAGGTGAAGTCAATTAGACAATGTGGAAAGTATGAGCGAGAAAATATGAGAACAGGGGCAAAGAACTCCGAAACTCCTCTTCCCATATCGATTTTCCTTGCTGCTAGTGTGTTGAAAGATAAAAGTTCAAAGCTACTACATGAAGCACGGGGTCTGGATGATGTTGTGAAGATTTTGAATGACATGACTGGAAATCTAGATGCTAAAAAGGCTTGTTCCGGGGCTATGAAACTTCATAAAAAATATTTGAGAAAGGCCAAGAAAACGTAA 1344 0.401 MIFEMWGDNGVPADSFYQIRPECINDVPVSRFKIKPGKTLSPRKWHAAFTEEGYLDIGKILRRIYRGGIHPSIRGEVWEFLLGCYDPKSTFDEREQIRQRRRLEYARWKEECRQMFPFVGSGRYISSPVITDDGQPIQDPSVLLESNPDKGLVLVPQDNYRSSSIDARNNLEKVTDKRVIQWLLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWLDKDVGYGQGMSDLCSPMIILLEDEADAFWCFERLMRRLRGNFKCTDRSVGVETQLSNLASITQVLDPKLHKHLEQLGGGDYLFAFRMLMVQFRREFSFCDSLYLWEMMWALEYDPDLFWMYEDAQRAPTSAESSRGKVKSIRQCGKYERENMRTGAKNSETPLPISIFLAASVLKDKSSKLLHEARGLDDVVKILNDMTGNLDAKKACSGAMKLHKKYLRKAKKT* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1048 447 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 5 446 - -
Ahy18g1048 447 SMART tbc_4 65 357 IPR000195 -
Ahy18g1048 447 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 272 440 IPR035969 -
Ahy18g1048 447 ProSiteProfiles TBC/rab GAP domain profile. 68 334 IPR000195 -
Ahy18g1048 447 Gene3D - 270 447 - -
Ahy18g1048 447 Pfam Rab-GTPase-TBC domain 164 332 IPR000195 -
Ahy18g1048 447 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 5 446 - -
Ahy18g1048 447 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 44 294 IPR035969 -
Ahy18g1048 447 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 165 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1048 Ahy-Chr18 15292313 15297455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1048 - - adu:107462412 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1048 18 15292313 15297455 Ahy18g1048 18 15292313 15297455 ECH
Ahy18g1048 18 15292313 15297455 Ahy8g1787 8 35956433 35961450 hybridization