LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy18g0778	ATGTCTAAGATGTCTAGTCTCTTGGGATTCTTTGTGGGTCTAGTTTTGGTGGGGGTTGTTGCCTCTTCCAAGTTTGAAGAACTCTACCAGCCTGCTTGGGCCTTCGATCATTTCATCCACGATGGCGAACTCATTAAACTCAAGCTTGATAACTATTCAGGTGCTGGTTTTGGATCAAAGAGCAAATATATGTTTGGGAAAGTGAGCATCCAACTTAAGCTTGTGGAGGGTGACTCTGCTGGAACCGTTACTGCTTTCTATATGTCATCGGAGGGTCCAAATCACAACGAATTTGATTTTGAGTTCTTGGGGAACACTACTGGTGAGCCTTATTCGGTGCAGACGAATGTGTATGTGAATGGTGTTGGTAACAGGGAGCAGAGACTCGACCTATGGTTCGATCCCACCAAGGACTTCCACACCTACTCTATCTTCTGGAATCAACGCCAAGTTGTGTTCCTAGTGGACGAGACGCCAATAAGGGTGCACACAAACCTTGAACACAAGGGAATCCCTTTCCCTAAAGACCAAGCAATGGGAGTGTACAGCTCAATATGGAACGCAGATGATTGGGCCACACAGGGTGGTAGGGTGAAGACAGATTGGAGCCATGCACCATTCGTTGCCACATACAAGGACTTCACGATTGACGCGTGTGAGTGCCCAGTGGGAGTGTCATCGTCATCAGTGGCCCCGGAAAATGCTAAGAGGTGCAGTAGCAGCGAGGATAAGAAGTATTGGTGGGATGAACCAACCATGTCGGAGTTGAACGTTCACCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGGTCTATGACTATTGCACTGATACTGCTAGGTTCCCAGTCACACCCGCTGAGTGTGTCCACCACCGTCACTAA	888	0.482	MSKMSSLLGFFVGLVLVGVVASSKFEELYQPAWAFDHFIHDGELIKLKLDNYSGAGFGSKSKYMFGKVSIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLDLWFDPTKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFTIDACECPVGVSSSSVAPENAKRCSSSEDKKYWWDEPTMSELNVHQSHQLMWVRANHMVYDYCTDTARFPVTPAECVHHRH*	296

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy18g0778	295	PIRSF	EndGlu_transf	1	295	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Ahy18g0778	295	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	243	290	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Ahy18g0778	295	Gene3D	-	14	295	-	-
	Ahy18g0778	295	PRINTS	Glycosyl hydrolase family 16 signature	55	73	IPR008264	GO:0004553\|GO:0005975
	Ahy18g0778	295	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Ahy18g0778	295	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975
	Ahy18g0778	295	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	5	211	IPR000757	GO:0004553\|GO:0005975
	Ahy18g0778	295	CDD	GH16_XET	21	290	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Ahy18g0778	295	Pfam	Glycosyl hydrolases family 16	28	203	IPR000757	GO:0004553\|GO:0005975
	Ahy18g0778	295	SUPERFAMILY	Concanavalin A-like lectins/glucanases	39	294	IPR013320	-
	Ahy18g0778	295	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	18	293	IPR044791	GO:0004553
	Ahy18g0778	295	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	18	293	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy18g0778	Ahy-Chr18	8787644	8789518	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy18g0778	55	295	Glycoside Hydrolase	AT4G03210	77.178	5.94e-144	404

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy18g0778	K08235		-	gmx:100801567	547.354

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy18g0778	18	8787644	8789518	Ahy18g0778	18	8787644	8789518	ECH
	Ahy18g0778	18	8787644	8789518	Ahy8g1557	8	32459764	32461566	hybridization
	Ahy13g1440	13	18501534	18504029	Ahy18g0778	18	8787644	8789518	PCT