Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0484 ATGCGGATCTTCGTTCTCCTCTCCTTCACCACTCTCCTCCTCTTCTCCACCTTCTCAATTACTTATTGCAAGGACTCCGCCACCACCGCCGCCGCCGCCGCCGCTGATGACGATGAAGATCTCAGTTTCCTCGAAGAGGCCGATGACACCTCCTCCTCTCATCATCACCAGTACGAAGGTCACTACCCGGATCCCGACCAAATCGACGACGCTGATCTCGACGACTTCACTGGCTTCGACGAGACAGAGTTCAATCCTGACGCCTACAAAGAAGCCGAAGTGGACGAAAAGGATGTCGTCATTTTGAAGGATAAGAACTTCACCGACGTTGTCAAGAACAACCGCTACGTTATGGTTGAGTTCTACGCGCCTTGGTGCGGTCACTGCCAAGCCTTGGCTCCCGAGTACGCCGCCGCCGCCACTGAGCTGAAGGGCGAGAACGTCATTTTGGCGAAGGTGGATGCAACGGAGGAGAACGAATTAGCGCAGGAGTACGATATACAGGGTTTTCCCACCGTGTACTTCTTCATTGATGGAGTTCACAAGACTTACAATGGCCTCAGGAACAAAGATGCTATAGTGAGCTGGATTAAGAAGAAGATAGGACCTGGTATCTACAACATTACCACAGTGGAGGATGCTGAACGCATTTTGACCTCCGAAAGCAAAGTTGTTTTGGGATTCCTTAACTCTTTAGTCGGTCCGGAGAGTGACGAGCTAGCTGCTGCATCAAGACTTGAGGATGAAGTCACCTTTTATCAAACTGTGAATCCTGATGTGGCGAAGCTTTTCCATATTGACCCGAGCATTAAGCGCCCAACTTTGATCCTGATCAAGAGAGAAGAGGAAAAACTGAACCATTTTGATGGTCAATTTGTGAAGTCTGAACTAGCAGACTTTGTGTTCGCCAATAAGCTTCCCTTGGTAACAACTTTTACAAGAGAAAGCGCACCATCAGTTTTTGAAAATCCAATCAAGAAACAGATATTGTTGTTTGCAACCTCAAACGATTCGGAAAAGTTCCTCCCGGTATTTCAAGATGCAGCAAAATTTTTCAAGGGGAAGCTGATCTTTGTGTATGTGCAAGTGGATAATGAAGATGTTGGAAAGCCGGTTTCAGATTACTTTGGTATATCTGGGGATGGTCCAAATGTACTTGCATACACTGGTAATGATGATGGAAGAAAATTTGTGCTTGATGGGGAGATGACTATTGACAAAATAAAGGCGTTTGGGGAAGATTTCCTTCAAGACAAGCTAAAACCTTTCTACAAGTCGGATCCAGTTCCAGAAAGTAATGATGGTGATGTGAAAATAGTTGTTGGGAATAACTTTGACAAAATTGTCTTGGATGAATCAAAGGATGTTCTCCTAGAGATTTATGCTCCCTGGTGTGGTCACTGCCAAGCACTGGAACCAATATACAACAAACTTGCAAAACATCTTCGCAGTATTGACTCACTTGTCATAGCCAAGATGGATGGAACAACAAATGAGCATCCTAGGGCAAAGTCTGATGGATTCCCCACACTACTCTTCTTCCCAGCAGGAAACAAGAGTTTTGACCCTATTACCGTTGATACAGATCGTACAGTGGTAGCTTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAGCCTCGGCCTCGACTTCTAAACCTGAGGGTACTGATGTTACCAAGGAGAGTTCTGACGTCAAGGAAAGCAAGAGTAGCAGTAGCGACTTGAAGGATGAATTATAA 1761 0.456 MRIFVLLSFTTLLLFSTFSITYCKDSATTAAAAAADDDEDLSFLEEADDTSSSHHHQYEGHYPDPDQIDDADLDDFTGFDETEFNPDAYKEAEVDEKDVVILKDKNFTDVVKNNRYVMVEFYAPWCGHCQALAPEYAAAATELKGENVILAKVDATEENELAQEYDIQGFPTVYFFIDGVHKTYNGLRNKDAIVSWIKKKIGPGIYNITTVEDAERILTSESKVVLGFLNSLVGPESDELAAASRLEDEVTFYQTVNPDVAKLFHIDPSIKRPTLILIKREEEKLNHFDGQFVKSELADFVFANKLPLVTTFTRESAPSVFENPIKKQILLFATSNDSEKFLPVFQDAAKFFKGKLIFVYVQVDNEDVGKPVSDYFGISGDGPNVLAYTGNDDGRKFVLDGEMTIDKIKAFGEDFLQDKLKPFYKSDPVPESNDGDVKIVVGNNFDKIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKHLRSIDSLVIAKMDGTTNEHPRAKSDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPASASTSKPEGTDVTKESSDVKESKSSSSDLKDEL* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0484 586 CDD PDI_b_family 205 304 - -
Ahy18g0484 586 ProSitePatterns Thioredoxin family active site. 457 475 IPR017937 -
Ahy18g0484 586 CDD PDI_b'_family 326 416 - -
Ahy18g0484 586 Gene3D Glutaredoxin 306 430 - -
Ahy18g0484 586 ProSitePatterns Thioredoxin family active site. 118 136 IPR017937 -
Ahy18g0484 586 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 571 - -
Ahy18g0484 586 SUPERFAMILY Thioredoxin-like 433 544 IPR036249 -
Ahy18g0484 586 ProSiteProfiles Thioredoxin domain profile. 79 202 IPR013766 -
Ahy18g0484 586 SUPERFAMILY Thioredoxin-like 304 434 IPR036249 -
Ahy18g0484 586 TIGRFAM ER_PDI_fam: protein disulfide isomerase 97 586 IPR005792 GO:0003756
Ahy18g0484 586 SUPERFAMILY Thioredoxin-like 206 316 IPR036249 -
Ahy18g0484 586 MobiDBLite consensus disorder prediction 47 66 - -
Ahy18g0484 586 Pfam Thioredoxin 99 199 IPR013766 -
Ahy18g0484 586 Pfam Thioredoxin 437 522 IPR013766 -
Ahy18g0484 586 TIGRFAM pdi_dom: protein disulfide-isomerase domain 102 200 IPR005788 GO:0003756
Ahy18g0484 586 MobiDBLite consensus disorder prediction 564 586 - -
Ahy18g0484 586 SUPERFAMILY Thioredoxin-like 94 202 IPR036249 -
Ahy18g0484 586 Gene3D Glutaredoxin 431 545 - -
Ahy18g0484 586 Pfam Thioredoxin-like domain 241 411 - -
Ahy18g0484 586 CDD PDI_a_PDI_a'_C 437 539 - -
Ahy18g0484 586 CDD PDI_a_family 100 197 - -
Ahy18g0484 586 PRINTS Thioredoxin family signature 125 134 - -
Ahy18g0484 586 PRINTS Thioredoxin family signature 117 125 - -
Ahy18g0484 586 PRINTS Thioredoxin family signature 166 177 - -
Ahy18g0484 586 PANTHER PROTEIN DISULFIDE ISOMERASE 2 571 - -
Ahy18g0484 586 Gene3D Glutaredoxin 91 202 - -
Ahy18g0484 586 MobiDBLite consensus disorder prediction 550 586 - -
Ahy18g0484 586 MobiDBLite consensus disorder prediction 45 66 - -
Ahy18g0484 586 ProSiteProfiles Thioredoxin domain profile. 414 544 IPR013766 -
Ahy18g0484 586 Gene3D Glutaredoxin 203 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0484 Ahy-Chr18 4311720 4315487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0484 K09580 - gmx:100170706 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0484 18 4311720 4315487 Ahy18g0484 18 4311720 4315487 ECH
Ahy18g0484 18 4311720 4315487 Ahy13g0348 13 3518694 3522829 ECH
Ahy18g0484 18 4311720 4315487 Ahy8g1291 8 28561611 28565416 hybridization
Ahy18g0484 18 4311720 4315487 Ahy13g0348 13 3518694 3522829 PCT
Ahy13g0348 13 3518694 3522829 Ahy18g0484 18 4311720 4315487 PCT