Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0048 ATGCGAAGCCGAAAGAAATCTATTGTCTGGGAGTACTTCACTGTGAAAACTGTTAGCCCTGGATGTGCTAAGGCTTACTGTAAACAATGCAATAAGGAATTTGCATACATGACAGGTTCAAAACAATCTGGCACAAGCCATCTCAAGAGGCACATTTCATTAGGAATCTGTCTGAAAAATCACCAAACCCCTTCTGGAGAAGATAATGTTCAGCCGCCAAAGAAACATTTCACAAAAGCAATGTCTCACGATGCCCACATACCATTTGACCAGGAGCAATGCAATGACAACATAGCTAAGATGATCATTTTGCATGACTATCCACTTCATATTGTGGAACACCAGGGTTTCATTGATTTTGTGCGGTTACTTCAACCTCAGTACAATCCACTAAGCTTAAAAGATGTTCAAGGGGATTGCGTCGCAATGTACCTCAGAGAAAAGCAAAACCTCTTACATGTCATCAATGGGATTCCTGGACGAGTCAACCTTACTGTGGATTATTGGACTTCAAACCAGACATTGGCCTATGTTTTTCTTCGAGGACACTTCATTGGTGGTGATTGGAACTTACATCATCCCATTCTCAGTGTTATGATGGTGCCTTTTCCTGATTCTGACAATTCCTTGAATCAAACTATACTCTCTTGCATAAATGATTGGCATTTGGAGGGTCGGCTATTCACCATCACACTTGATAAGTTATTCTCAAATGGGACTTTGATGGGAAATCTCAGATGTCTCCTCTCTGTTAAGAACCCTGTGATCTTTGATGGTCAGTTATTAAGCCAGAACTGTTATGCTCGTGTGCTTAGTTGCCTTGCATTAGATGCACTGTCGGCAATGAAAGAAACTGTTGGTAAAATTCGCGAGAGTGTGAAGTATGTGAAATCTTCAGAATTTCATGAAGAGAAGTTTTTTGCGTTAAAGCGACAGCTTCAAGTCCCTAGTATGATGGAGCTCTTAGTTGATGATCAAAATAAATGGGATACAGTTTATCGAATGCTTGCTGCTGCCTGTGAATTAAAGGAAGTCTTTGGTTGCTTTGATGACTCCGGTCCTGATTATAAAATGAATCTTACTATGGACGACTGGAAGCATGTGGAAAAGCTCTGCATGTGTTTAAAGTATTTGTACGATGCAGCTAACATCTTAACTATTCGACCATACCCAACTGCAAACTTGTTTTTCCCTGAAGCATCAAACCTTTTGCTAGAGTTGACACACGCAGCATTCAGCCAGGACCCTTTCTACAGTACACTGGTTATGCCTTTGCAAGAGAAATTTGATCGGTATTGGAGAGAAAGCTGCCTCATCTTGGCTGCTGCTGTAGCCATGGACCCAAGGTATAAAATGAAACTTGTAGAATCCACTTTTGCGAGGATATTTGGTCAGAATTCTGAACCACGGCTAAGAATTGTTGAGGATGGTCTACATGAACTGTTTGTTGAATATATCATACAAATGCTTCCTTCTTCAGCAACAAATGGTGATGAAGGGAACGAGGCTACTATAGTGCACAAGCCTGAGCCTGAGCCTGAGCCCAAGCCCTGCCATGAAGAGTCACTTAATGGATCTCTCTTTGCTGAAGATGGGCTTTTTGATATTGAACTTTTTATATCTGACTTCGCTGGTGACCATCAATTTAATTCAGAATTGAGTGAGTATTTGGAAGAACCTCTGGAGCCTCAAGTACAAGAATTTGATATTCTAAACTGGTGGAGAGGAAAGGAATGGAAGTACCCCACTTTGTCTAGAATGGCATCTGATATTTTGTCTATACCTGTATCCACTCTTTCTGCAGATTCTGCTTTTGACATGCAAATTAGAAAAATGGATAGCTATAGGTGTTCGTTGGGGGCTCTAACTCTTGAAGCCATTACATGTACCAAGGATTGGTTCCAGTACGAATAA 1914 0.4096 MRSRKKSIVWEYFTVKTVSPGCAKAYCKQCNKEFAYMTGSKQSGTSHLKRHISLGICLKNHQTPSGEDNVQPPKKHFTKAMSHDAHIPFDQEQCNDNIAKMIILHDYPLHIVEHQGFIDFVRLLQPQYNPLSLKDVQGDCVAMYLREKQNLLHVINGIPGRVNLTVDYWTSNQTLAYVFLRGHFIGGDWNLHHPILSVMMVPFPDSDNSLNQTILSCINDWHLEGRLFTITLDKLFSNGTLMGNLRCLLSVKNPVIFDGQLLSQNCYARVLSCLALDALSAMKETVGKIRESVKYVKSSEFHEEKFFALKRQLQVPSMMELLVDDQNKWDTVYRMLAAACELKEVFGCFDDSGPDYKMNLTMDDWKHVEKLCMCLKYLYDAANILTIRPYPTANLFFPEASNLLLELTHAAFSQDPFYSTLVMPLQEKFDRYWRESCLILAAAVAMDPRYKMKLVESTFARIFGQNSEPRLRIVEDGLHELFVEYIIQMLPSSATNGDEGNEATIVHKPEPEPEPKPCHEESLNGSLFAEDGLFDIELFISDFAGDHQFNSELSEYLEEPLEPQVQEFDILNWWRGKEWKYPTLSRMASDILSIPVSTLSADSAFDMQIRKMDSYRCSLGALTLEAITCTKDWFQYE* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0048 637 SMART bed5 4 60 - -
Ahy18g0048 637 SUPERFAMILY Ribonuclease H-like 159 635 IPR012337 -
Ahy18g0048 637 Pfam hAT family C-terminal dimerisation region 552 634 IPR008906 GO:0046983
Ahy18g0048 637 ProSiteProfiles Zinc finger BED-type profile. 4 68 IPR003656 GO:0003677
Ahy18g0048 637 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 2 637 - -
Ahy18g0048 637 Pfam Domain of unknown function (DUF4413) 389 485 IPR025525 GO:0003677
Ahy18g0048 637 PANTHER BED FINGER-RELATED 2 637 IPR045259 -
Ahy18g0048 637 SUPERFAMILY beta-beta-alpha zinc fingers 7 54 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0048 Ahy-Chr18 352874 355814 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0048 - - gmx:106795554 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0048 18 352874 355814 Ahy18g0048 18 352874 355814 ECH
Ahy18g0048 18 352874 355814 Ahy7g2261 7 80763675 80766615 hybridization
Ahy18g0048 18 352874 355814 Ahy9g0127 9 1188400 1191888 PCT
Ahy9g0127 9 1188400 1191888 Ahy18g0048 18 352874 355814 PCT