Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3245 ATGTCGAGTCAAACTTCCTCTGCTTTTCTCGACGACGAACTTTCTGAAGCCTCGTTGCTGTCGTCGTTCCCGTTTTCTCAGCCACCGAACTCCCCTTATCAGCCGAACCAAAACCCCTATGAGGTTCAAACCCTAGAGGACGCTTTTGATCGTCTTTCTGTCTCCCCTTTCAGCTTCAACAATCTCCCGCCATCTCTTCCTTTCGATCATCGCGATGGTTTCAACGCCGTTACAAAAACCGAGCCTTTTGATCGCCGTGGCCATCAACACCTTCAAAGCTCCAATCTTGTGGGCCAAATTCAAGAGACACATGGCGGCTCCATCAACAACACGAGAGCTGCTGCCAATGCTGCCTTGGTGACACCGGAGAATAATCCTCCGGAGGGACACGACGGCGACGGTGGAAACTCGAACGGCATTTGGCCCGGTTCTTCCAATAGAACAATCGGTGCTTCAAGCAGGTCGTACAGCTCTTCAATGAATGATTTTTTCACGAGTGGATACAGTAGCAGGGGTTTTCCGAGTGTGCCGTTTTCGAATGGGGCTGTTGATCAATTTCATCAACGAAATTCGGGTGTAGGAGGTGGTTCGAGTTTTCCGGTGGCGGCGGGGTTGAATAATATTAATAATAACAACAATAGCGTTGGAGGGCGTTCTTATCTGTTCCATGATTTGCGAGGAAAGGTTGTGATGATGGCTAAGGATCAGAACGGAAGCAGGATTTTGCGGCAGAAGTTGGAAAGATTGACCCCTCAGGAGGTTTCTTTGGCGTTCTTGGAGATGATAAATCATTTTGCTGAGTTGATGGTTGATCCTTGTGGGAGCAAAGTTGTTCATGATATTCTTAAACTTATCAGGGAACAACAGAGGACCCTCATCATCATGATGATAACCAAAATTAATTTACAGCTTGTTGAAATATGCCTTAACCCTCATGGGTCCTGCACTGTTGAGAAATTATTGGAACATGTTACCAACCAGGAGCAACGAGCCCTTATTGTGAGAGGTTTAAGACCTGGTGCTGTTTCATTGGCTACTGATACACATGGTCATAGGGTACTTATGTATTGTCTTAAGCATTTCTCTCATGAAGAGAGTAAGTATCTTCTAAGCGCACTTGCAAATCACCTCTTTGGGATCGCAACAGATAAGACCGGTTGTTGTGTGATACAAGAATGTGTAAAATATGCCCAGGGACAACTGAAACTGCAACTAATTGCTGAGATTATATTGAATGCTCAACAACTATCCGAAGACTCTTACGGTAACTATGTTGTACAACATTTATTGGGTTTGCAAATACCAGCAGTGACAGAAAGTCTAATGAGACAGCTTGAAGGGTCATTCTTTTATCTTTCATGCAATAAATATGGAAGTAATGTTGTGGAGAAGTTCTTTCAGTGCTCGGAAGAACAGAATGCGGCACGTATTACTGTGGAGTTGCTCTGCCACCCAAATGTAGCAATGCTTCTTGTAGATCCCTATGGAAATTATGTTATACAATCGGCTCTGGTGATGTCCAAGGATCCTATTAGAAGTTCCATATTGCTGCTGATCCAACAGAATTATCCAATGATGCGTAGCAATGTCTATGGCCAAAAGATTCTTGAGAGGTTTGACAGAGGCAAAATACGCACACACAATAAACATCACACCTATGAGTAG 1665 0.4426 MSSQTSSAFLDDELSEASLLSSFPFSQPPNSPYQPNQNPYEVQTLEDAFDRLSVSPFSFNNLPPSLPFDHRDGFNAVTKTEPFDRRGHQHLQSSNLVGQIQETHGGSINNTRAAANAALVTPENNPPEGHDGDGGNSNGIWPGSSNRTIGASSRSYSSSMNDFFTSGYSSRGFPSVPFSNGAVDQFHQRNSGVGGGSSFPVAAGLNNINNNNNSVGGRSYLFHDLRGKVVMMAKDQNGSRILRQKLERLTPQEVSLAFLEMINHFAELMVDPCGSKVVHDILKLIREQQRTLIIMMITKINLQLVEICLNPHGSCTVEKLLEHVTNQEQRALIVRGLRPGAVSLATDTHGHRVLMYCLKHFSHEESKYLLSALANHLFGIATDKTGCCVIQECVKYAQGQLKLQLIAEIILNAQQLSEDSYGNYVVQHLLGLQIPAVTESLMRQLEGSFFYLSCNKYGSNVVEKFFQCSEEQNAARITVELLCHPNVAMLLVDPYGNYVIQSALVMSKDPIRSSILLLIQQNYPMMRSNVYGQKILERFDRGKIRTHNKHHTYE* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3245 554 ProSiteProfiles Pumilio RNA-binding repeat profile. 260 295 IPR001313 GO:0003723
Ahy17g3245 554 Pfam Pumilio-family RNA binding repeat 415 430 IPR001313 GO:0003723
Ahy17g3245 554 Pfam Pumilio-family RNA binding repeat 376 410 IPR001313 GO:0003723
Ahy17g3245 554 Pfam Pumilio-family RNA binding repeat 264 297 IPR001313 GO:0003723
Ahy17g3245 554 Pfam Pumilio-family RNA binding repeat 228 255 IPR001313 GO:0003723
Ahy17g3245 554 Pfam Pumilio-family RNA binding repeat 486 516 IPR001313 GO:0003723
Ahy17g3245 554 Pfam Pumilio-family RNA binding repeat 342 372 IPR001313 GO:0003723
Ahy17g3245 554 Pfam Pumilio-family RNA binding repeat 449 481 IPR001313 GO:0003723
Ahy17g3245 554 Pfam Pumilio-family RNA binding repeat 303 334 IPR001313 GO:0003723
Ahy17g3245 554 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 203 543 IPR033133 GO:0003723
Ahy17g3245 554 ProSiteProfiles Pumilio RNA-binding repeat profile. 408 443 IPR001313 GO:0003723
Ahy17g3245 554 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 176 538 - -
Ahy17g3245 554 PANTHER PUMILIO HOMOLOG 15 176 538 - -
Ahy17g3245 554 SUPERFAMILY ARM repeat 220 539 IPR016024 -
Ahy17g3245 554 ProSiteProfiles Pumilio RNA-binding repeat profile. 299 335 IPR001313 GO:0003723
Ahy17g3245 554 ProSiteProfiles Pumilio RNA-binding repeat profile. 372 407 IPR001313 GO:0003723
Ahy17g3245 554 ProSiteProfiles Pumilio RNA-binding repeat profile. 444 479 IPR001313 GO:0003723
Ahy17g3245 554 MobiDBLite consensus disorder prediction 121 146 - -
Ahy17g3245 554 Gene3D - 205 548 IPR011989 -
Ahy17g3245 554 ProSiteProfiles Pumilio RNA-binding repeat profile. 336 371 IPR001313 GO:0003723
Ahy17g3245 554 SMART pum_5 336 371 IPR001313 GO:0003723
Ahy17g3245 554 SMART pum_5 444 479 IPR001313 GO:0003723
Ahy17g3245 554 SMART pum_5 372 407 IPR001313 GO:0003723
Ahy17g3245 554 SMART pum_5 482 517 IPR001313 GO:0003723
Ahy17g3245 554 SMART pum_5 408 443 IPR001313 GO:0003723
Ahy17g3245 554 SMART pum_5 299 335 IPR001313 GO:0003723
Ahy17g3245 554 SMART pum_5 224 259 IPR001313 GO:0003723
Ahy17g3245 554 SMART pum_5 260 295 IPR001313 GO:0003723
Ahy17g3245 554 ProSiteProfiles Pumilio RNA-binding repeat profile. 480 517 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3245 Ahy-Chr17 134533778 134537406 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3245 - - adu:107461162 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3245 17 134533778 134537406 Ahy17g3245 17 134533778 134537406 ECH
Ahy17g3245 17 134533778 134537406 Ahy8g0961 8 18423945 18427564 hybridization