Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3219 ATGCATACGTGGAAGCAGATCAGAGACAGGGAATTTGGTAATTTGCGCCCACATCGTTTCTCCAATCGGATCAAGTCCCGCCGCGTCTCCGACCTCCAATTGTCAAACCACAAAGACTTTCTCTCTCCTCACAAGGGCGCCCTGAACTCCCTTCAGGTTGATTTGACAGAGGGAAGATACTTGCTATCCGCTGCCGCAGATGCCTCCGTCGCCGTCTTCGACGTGCAGCGCCCCACCGAGTACGAAGCCGGTGGCCTCATATCCAAGCACCGGTGTCTGTTTCTCGTGGACAAGCAGCACCAGCTGGCGCACAAGTATGCTGTTTCCTCCGCCGTCTGGTACCCTGTGGACACTGGATTGTTCATCACTGGCTCCTTCGATCACCACATCAATGTCTGGGACACCAACACCACTCAGGTTGTGGTGAATTTCAAGATGCCTGGCAAGGTTTATCGGACTGCCATGTCCCCCTTGGCCACCTCTCACATGCTCGTCGCCGCCGCCACCGAGGATGTCCAAGTCCGCCTCTGTGACGTTGCTTCTGGTGCTTTTGCTCACACCTTGTCCGGCCACCGTGCAGATGGAGTAATGAGTGTTGAATGGTCTACTTCAAGTGAATGGGTGTTGATGACTGGGGGATGCGATGGTGCGATACGTTTTTGGGATATTAGACGAGCCGGCTGTTTCCTTGTTTTAGATCAATCTCGGACTCAGCTTGGAAGACGCCCATCCGTACTTAAACGCTCCATGACGCACAAGGAGTCGACTTTTAAGTCTTCCTCGGCTGGCCAAACAACAAGTGCAAAAGTTCGCGTTTCACAAAAAAAGCTTCCTAATGGGAATGGGAGCAGACAGGTTGTGATTGGTAGAGTTCCATCCAAGGGATCAATAAAGCAGAGATTACATCCAGGAATGCTGTCCACTCAGGATCGCGCAACAGCTCATTATGGTGCTGTGACAGGGTTAAAAGTAACAGATGATGGCATGTATCTACTAAGCTCAGGGTCTGATTCAAGACTAAGGTTGTGGGATATTGAATCTGGCTGTGACACGCTAGTGAACTTTGAAACCGTACGCCTGCAAACAAATAAACCAATTCAATTAGCCACCTCTCAGGATTCAACCCGCGTTTTTGTTCCATGCATGAGAACTGTGAAGGCATTTGACATGTGGTCTGGGAGCACGTCTGCAACATTTCGTGGCCACTATGAATGCGTGAACTCTTGCTGGTTTAATGAACAAGATCAGGAATTATACACTGGTGGGAATGATAGACAAATTCTTGTGTGGTCACCTGCTAGGTTAATTTCAGATGAAATGGAAGAAGGAATTGCTGAAGATCAGGACAGCTGGAGTAACTGA 1362 0.4971 MHTWKQIRDREFGNLRPHRFSNRIKSRRVSDLQLSNHKDFLSPHKGALNSLQVDLTEGRYLLSAAADASVAVFDVQRPTEYEAGGLISKHRCLFLVDKQHQLAHKYAVSSAVWYPVDTGLFITGSFDHHINVWDTNTTQVVVNFKMPGKVYRTAMSPLATSHMLVAAATEDVQVRLCDVASGAFAHTLSGHRADGVMSVEWSTSSEWVLMTGGCDGAIRFWDIRRAGCFLVLDQSRTQLGRRPSVLKRSMTHKESTFKSSSAGQTTSAKVRVSQKKLPNGNGSRQVVIGRVPSKGSIKQRLHPGMLSTQDRATAHYGAVTGLKVTDDGMYLLSSGSDSRLRLWDIESGCDTLVNFETVRLQTNKPIQLATSQDSTRVFVPCMRTVKAFDMWSGSTSATFRGHYECVNSCWFNEQDQELYTGGNDRQILVWSPARLISDEMEEGIAEDQDSWSN* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3219 453 MobiDBLite consensus disorder prediction 247 284 - -
Ahy17g3219 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 348 - -
Ahy17g3219 453 SUPERFAMILY WD40 repeat-like 40 432 IPR036322 GO:0005515
Ahy17g3219 453 ProSitePatterns Trp-Asp (WD) repeats signature. 209 223 IPR019775 -
Ahy17g3219 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 431 IPR001680 GO:0005515
Ahy17g3219 453 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Ahy17g3219 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 431 - -
Ahy17g3219 453 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Ahy17g3219 453 Pfam WD domain, G-beta repeat 186 222 IPR001680 GO:0005515
Ahy17g3219 453 Pfam WD domain, G-beta repeat 395 431 IPR001680 GO:0005515
Ahy17g3219 453 Pfam WD domain, G-beta repeat 103 134 IPR001680 GO:0005515
Ahy17g3219 453 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Ahy17g3219 453 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Ahy17g3219 453 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Ahy17g3219 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Ahy17g3219 453 MobiDBLite consensus disorder prediction 255 281 - -
Ahy17g3219 453 Gene3D - 292 434 IPR015943 GO:0005515
Ahy17g3219 453 Gene3D - 4 277 IPR015943 GO:0005515
Ahy17g3219 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Ahy17g3219 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 224 IPR001680 GO:0005515
Ahy17g3219 453 SMART WD40_4 181 222 IPR001680 GO:0005515
Ahy17g3219 453 SMART WD40_4 302 344 IPR001680 GO:0005515
Ahy17g3219 453 SMART WD40_4 392 431 IPR001680 GO:0005515
Ahy17g3219 453 SMART WD40_4 34 74 IPR001680 GO:0005515
Ahy17g3219 453 SMART WD40_4 95 134 IPR001680 GO:0005515
Ahy17g3219 453 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 452 IPR042238 GO:0006283
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3219 Ahy-Chr17 134279960 134283077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3219 99 229 Miscellaneous Gene Families AT5G08390 27.481 2.73e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3219 K10570 - gmx:100790433 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3219 17 134279960 134283077 Ahy17g3219 17 134279960 134283077 ECH
Ahy17g3219 17 134279960 134283077 Ahy8g0934 8 18010840 18015137 hybridization