LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy17g3190	ATGTTGTCTAGAAAGGCTAGTAAGGACTCTCATGGCCAAGACTCTTCTTATTTTCAAGGATGGCAAGAGTATGAGAAAAACCCTTATCATCCCATTCAAAATCCAATGGGAATCATTCAGATGGGACTTGCAGAAAATCAGCTTTCATTTGACCTTCTTGAATCTTGGCTACGAAGAAATTCTAATACAATGGCGTTGAAGAAAGATGGGGTTTCTGCATTTAAAGATCTTGCTTTGTTTCAGGATTACCATGGTTTGCCAGCTTTCAAAGAAGCGTTAGTGAACTTTATGACAAGCATGAGAGGAAACAAAATCAAATATAGTTCAGACAAGCTTGTCCTCACAGCTGGTGCAACCGCAGCAAATGAAATTCTCATGTTTTGTCTCACTGACCCTGGCCAAGCCTTCATCCTCCCCACACCCTATTATCCTGGGTTTGATAGAGATCTGAAATGGCAAACGGGGGCTGAGATTATTCCAATGCATTGCTCAAGCTCAAACGGTTTTAGAATCACTCGTTGCGCCTTAGAACAAGCCTATCAGTTAGGCCAAGAACTGAACCTCAAGATCAAAGGAGTGCTAGTGACTAACCCCTCAAATCCACTAGGCACCACAATGACCAAAACAGAACTGAACCACTTGCTCGATTTCGCAATCGACAAGAACATTCACATTGTAAGCGACGAAATCTATTCAGGCACCGTCTTCGACTCCTCCTCCACCACCAGTTTCACAAGCATCATGGAAGTGCTGAACGAGAGAAACAACAATAATTATAATAACATTAGGAACCATGTTCACATGGTGTATAGTCTCTCAAAGGACCTAGGTCTCCCTGGATTTAGAGTAGGAATGATTTACTCAAACAATGAAAAGGTTATCGCCGCAGCCACAAAAATGTCAAGCTTTGCACTTGTTTCGTCACAAACTCAATTCTTGCTTTCAAACTTACTCTCCGACGCTAAGTTCATTAAGAAATACATGGTGGAGAACCAGAGGAGGTTGAAGAGGCGCAAGGACATGCTTGTGCGTGGATTAAGGAAAGCAGGGATATCGTGTTTAAGGAGCAATGCTGGATTGTTCTGTTGGGTGGACATGAGGCACTTGTTGAGTTCAGATTCGTTTGAAGCGGAGAAGGAACTTTGGAAGAGGATTGTGTGTGAGGTTGGTTTGAACATATCACCAGGGTCTTCTTGCCATTGCTCTCAGCCAGGGTGGTTTAGAATTTGTTTTGCTAACATCTCCGAAGATGCATTGCACCTTGCCATGCACAGGATGAAGGCCTTCACAAACTCAATCTTCTCTGTTCGACTTCCCATCATCATGATGAGAAAGAAATCATTTTAA	1347	0.4269	MLSRKASKDSHGQDSSYFQGWQEYEKNPYHPIQNPMGIIQMGLAENQLSFDLLESWLRRNSNTMALKKDGVSAFKDLALFQDYHGLPAFKEALVNFMTSMRGNKIKYSSDKLVLTAGATAANEILMFCLTDPGQAFILPTPYYPGFDRDLKWQTGAEIIPMHCSSSNGFRITRCALEQAYQLGQELNLKIKGVLVTNPSNPLGTTMTKTELNHLLDFAIDKNIHIVSDEIYSGTVFDSSSTTSFTSIMEVLNERNNNNYNNIRNHVHMVYSLSKDLGLPGFRVGMIYSNNEKVIAAATKMSSFALVSSQTQFLLSNLLSDAKFIKKYMVENQRRLKRRKDMLVRGLRKAGISCLRSNAGLFCWVDMRHLLSSDSFEAEKELWKRIVCEVGLNISPGSSCHCSQPGWFRICFANISEDALHLAMHRMKAFTNSIFSVRLPIIMMRKKSF*	449

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy17g3190	448	Pfam	Aminotransferase class I and II	39	425	IPR004839	GO:0009058\|GO:0030170
	Ahy17g3190	448	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	271	284	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Ahy17g3190	448	SUPERFAMILY	PLP-dependent transferases	1	429	IPR015424	-
	Ahy17g3190	448	Gene3D	-	61	320	IPR015421	GO:0003824
	Ahy17g3190	448	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	133	154	-	-
	Ahy17g3190	448	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	223	246	-	-
	Ahy17g3190	448	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	111	131	-	-
	Ahy17g3190	448	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	41	67	-	-
	Ahy17g3190	448	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	187	211	-	-
	Ahy17g3190	448	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	74	90	-	-
	Ahy17g3190	448	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	297	320	-	-
	Ahy17g3190	448	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	265	289	-	-
	Ahy17g3190	448	Gene3D	Aspartate Aminotransferase, domain 1	27	425	IPR015422	GO:0003824
	Ahy17g3190	448	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	1	436	-	-
	Ahy17g3190	448	CDD	AAT_like	80	428	-	-
	Ahy17g3190	448	PANTHER	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 11	1	436	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy17g3190	Ahy-Chr17	133868417	133871409	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy17g3190	K01762		-	gmx:100803507	666.381

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g3190	17	133868417	133871409	Ahy8g0900	8	17420973	17423799	hybridization