Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3160 ATGGCGTGGAGGCATTTGATAACTCAGATAGCAAAGAATCAATCAGAATTGAGACTGGCAAAAAGTTTGTTGGCTAGGAGTTATTTATCAGTTGTAAAGTTTGAAGGCCGTGCAGGGAATAGGCTTTTTGGTGTCCAAGAGAGATTCCAGTCCAGCTATGTTGGCAATCTGGCTCGCCGAGTACGTGAGGCAGATGAAGCCAGTGAAGTTGCTCATCTTAAAAAACTTTATCGTCGCAATGATCCCGAAGCTGTGATTAGAGCATTTGAAAGTCAACCATCTCTGCAGACTAATCCAGAGGCACTTTCCGAATACATTAAAGCATTAGTCAAAGTTGATCGGCTTGATGAAAGTGAATTACTGAAGACCTTACGTAGAGGTATGTCTAGTTCATTGAGGGAAGAAGAAAGTATAGGAGGTTTTTCTGCTCTTAGAAATGTGGGAAAACCTACAAAAGATGGCATTCTTGGAACTGCAAGTGCCCCAATTCATATGGTGGCAGCAGAAGGTGCAAATTTCAAAGAGCAGCTGTGGCGCACAATTCGGTCCCTTTTAGTGGTCTTTCTCTTGATCTCTGGTGCAGGAGCACTCATTGAGGATAAAGGAATTAGCAAAGGACTTGGCATGAGTGAAGAAGTCCAACCCAGTGTGGAGACAAGTACTAAGTTTACTGATGTAAAAGGTGTTGATGAGGCAAAGGCTGAACTGGAAGAAATTGTGCACTACCTCCGAGATCCTAAGCGCTTTACTCGTCTTGGCGGCAAGCTCCCAAAAGGCGTTTTGCTTGTTGGCCCACCTGGCACTGGTAAAACGATGTTGGCACGAGCTATTGCTGGAGAGGCTGGGGTTCCTTTCTTCTCATGCAGTGGAAGTGAATTTGAAGAGATGTTTGTTGGTGTTGGTGCAAGAAGGGTGAGGGATCTTTTTGCTGCTGCAAAAAAGCGATCACCTTGTATAATCTTCATAGATGAGATTGATGCTATAGGAGGAAGCCGAAACCCAAAGGATCAAATGTACATGAAGATGACTTTGAATCAGTTACTTGTTGAGTTAGATGGATTCAAGCAAAATGAAGGCATAATTGTGATTGCAGCTACGAATTTTCCACAGTCATTAGATAAGGCATTGGTGAGGCCTGGGAGGTTTGATCGTCATGTTGTTGTCCCCAATCCAGATGTAGAAGGAAGGCGACAGATTTTGGAATCTCACATGTCAAAGGTTCTGAAGGCTGATGATGTCGATCTAATGATCATTGCTCGTGGAACACCTGGGTTTTCCGGTGCTGACCTTGCAAACTTGGTTAATGTTGCTGCTCTCAAGGCTGCCATGGATGGTGCTAAAGCTGTAACCATGAATGATTTAGAGTTTGCAAAGGACAAGATTATGATGGGAAGTGAACGCAAGTCAGCTGTTATATCCAAGGAGTCAAGAAAGATGACTGCTTTCCATGAGGGAGGTCACGCCCTAGTGGCAATTCATACAGATGGAGCACTTCCTGTTCACAAGGCAACTATAGTTCCTCGTGGGATGGCTCTTGGTATGGTTCATCAATTACCTGACAAGGATCAGACCAGTATCTCACGAAAACAGATGCTTGCCCGACTTGATGTTTCCATGGGAGGTCGGGTGGCTGAAGAGCTTATTTTTGGAGAAAGCGAAGTTACTTCTGGTGCATCCTCAGATCTTTCTCAGGCAACTAAGTTGGCTAGGGCAATGGTTACCAAATATGGTATGAGTAGTGAAGTCGGACTCGTTACCCACAACTACAATGATGACGGGAGAAGCATGAGCTCGGAAACTAGGTTGCTTATTGAGAAAGAGGTGAAGAACTTGCTGGAGACTGCTTACAACAATGCAAAAACTATTCTAACCACCCACAATAAGGAGCTTCATGCGCTTGCAAATGCTCTTCTGGAGCATGAGACACTCACGGGGAATCAGATAAAGGCTTTGCTTGAAAATGTCAACTCCCATCAGCAACAGCAAGCGCAAACAGTTGAAAACCAAGGCAGTTCACGGTCTAATCCAGCAGCTGCTGCTGCTGCAGCCGCTGCAGCCGCTGCGGCAGCGACTGCAGCCAAGGCTCAAAGTGTTGCCCCAGTGGGATCTTAG 2112 0.4531 MAWRHLITQIAKNQSELRLAKSLLARSYLSVVKFEGRAGNRLFGVQERFQSSYVGNLARRVREADEASEVAHLKKLYRRNDPEAVIRAFESQPSLQTNPEALSEYIKALVKVDRLDESELLKTLRRGMSSSLREEESIGGFSALRNVGKPTKDGILGTASAPIHMVAAEGANFKEQLWRTIRSLLVVFLLISGAGALIEDKGISKGLGMSEEVQPSVETSTKFTDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFIDEIDAIGGSRNPKDQMYMKMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHVVVPNPDVEGRRQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEFAKDKIMMGSERKSAVISKESRKMTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVHQLPDKDQTSISRKQMLARLDVSMGGRVAEELIFGESEVTSGASSDLSQATKLARAMVTKYGMSSEVGLVTHNYNDDGRSMSSETRLLIEKEVKNLLETAYNNAKTILTTHNKELHALANALLEHETLTGNQIKALLENVNSHQQQQAQTVENQGSSRSNPAAAAAAAAAAAAAATAAKAQSVAPVGS* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3160 703 SMART AAA_5 256 392 IPR003593 -
Ahy17g3160 703 Coils Coil 649 669 - -
Ahy17g3160 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 484 IPR027417 -
Ahy17g3160 703 CDD AAA 257 389 - -
Ahy17g3160 703 Pfam Peptidase family M41 471 650 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ahy17g3160 703 Gene3D Peptidase M41 465 664 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ahy17g3160 703 PANTHER METALLOPROTEASE M41 FTSH 9 684 - -
Ahy17g3160 703 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 9 684 - -
Ahy17g3160 703 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 264 283 - -
Ahy17g3160 703 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 671 690 - -
Ahy17g3160 703 Gene3D - 391 464 - -
Ahy17g3160 703 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 656 IPR005936 GO:0004176|GO:0004222|GO:0016020
Ahy17g3160 703 Gene3D - 207 390 IPR027417 -
Ahy17g3160 703 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 184 652 IPR005936 GO:0004176|GO:0004222|GO:0016020
Ahy17g3160 703 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Ahy17g3160 703 SUPERFAMILY FtsH protease domain-like 471 656 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ahy17g3160 703 Pfam ATPase family associated with various cellular activities (AAA) 260 389 IPR003959 GO:0005524|GO:0016887
Ahy17g3160 703 Pfam AAA+ lid domain 412 455 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3160 Ahy-Chr17 133409911 133415429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3160 82 652 Miscellaneous Gene Families AT5G53170 53.885 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3160 K08955 - cit:102621961 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3160 17 133409911 133415429 Ahy17g3160 17 133409911 133415429 ECH