Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3142 ATGGCGGATCCCTATTACCCTTACGTTCCTGACGGAGGAATCTCAAGAACTACCTTTCCTGGTTACATTCCAGCCGAGCCACCCTCTTTGGCTTCCCCTCTTCTCTCCAATTCCACCGCCTTGCGTGCTGCTGCATCTGATTACATGCAGAGCGATGTAAGTTTTTTGCGTATGAGTGCATACGGTGTTGATGATGCTCTGCTGGGTTCTGCGGTTCGTTCCGAATCTGTTTCAATGGCTCCAACAGGGCTTGACATAAAGGGGGCTTATTCAACTCTTGAAGACCCTACTGATCTTGGCAAAACTCGTGATGCTTCGTTACCTGTTAATCCGGTTATAAGTAACGAACGGACTGTCTCGAAGATCGATTACGATGCTCTCTCGAATTCGCTGCCTGAATCCAATGTTCTGTTTGTTGGTGGACTCCCAAAAGACTGCACCAGAAGGGAAGTTGGTCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATTAGAGTTGTTCACAAGGAGCCTAGACGGAGTGGAGACAAGGCTTTGACATTGTGTTTTGTGGAATTTGTTGATTCCAAATGTGCTCTCACTGCAATGGAAGCTCTGCAAGGCTACAAGTTTGATGATAAAAAACCCGAGTCACCAACCTTAAAAATTCAATTTGCACACTTTCCTTTCAATCTACCACATGATCATGGTGAGTAG 696 0.4569 MADPYYPYVPDGGISRTTFPGYIPAEPPSLASPLLSNSTALRAAASDYMQSDVSFLRMSAYGVDDALLGSAVRSESVSMAPTGLDIKGAYSTLEDPTDLGKTRDASLPVNPVISNERTVSKIDYDALSNSLPESNVLFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKALTLCFVEFVDSKCALTAMEALQGYKFDDKKPESPTLKIQFAHFPFNLPHDHGE* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3142 231 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 12 224 - -
Ahy17g3142 231 SUPERFAMILY RNA-binding domain, RBD 116 208 IPR035979 GO:0003676
Ahy17g3142 231 Gene3D - 132 221 IPR012677 -
Ahy17g3142 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 208 IPR000504 GO:0003723
Ahy17g3142 231 SMART rrm1_1 136 217 IPR000504 GO:0003723
Ahy17g3142 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 221 IPR000504 GO:0003723
Ahy17g3142 231 CDD RRM_RBPMS_like 135 217 - -
Ahy17g3142 231 PANTHER PROTEIN COUCH POTATO 12 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3142 Ahy-Chr17 133166209 133169096 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3142 - - ccaj:109789360 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3142 17 133166209 133169096 Ahy17g3142 17 133166209 133169096 ECH