Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3117 ATGGTGGTTTCCGATGCTTCCAACGGCGGTGGCTCTTCGTCTCCGCCACTGGTGGTGGAGCAAACCAACACGCTTGGGATCACGAAGCCTATCTCTCTCGCCGGTCCCACCGACGCCGATTTACATCGGAACGCCGAATTGGAGAAGTTTCTGCTTGATTCGGGACTCTACGAGAGCAATGAAGAAGCTGCCACCAGGAGAGAGGTTCTTCAGCGCCTTGATCAGACTGTTAAAAGCTGGGTGAAGCAGTTGACGCGTCAACGAGGCTATACGGATCAGATGGTTGAGGATGCCAATGCCGTTATTTTCACTTTCGGTTCTTATCGACTAGGGGTACATGGACCAGGAGCTGACATAGACACTTTGTGTGTTGGCCCTTCTTATGTGAATCGGGAGGAAGACTTCTTTATCATTCTGCATAACATCTTGGCTGAAATGGAAGAAGTTACTGAACTTCAACCAGTTCCAGATGCTCATGTCCCCGTAATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTTTATGCAAGTATATCTCTTTTGGTTGTGCCTGAAGACCTGGACATCTCACATGGCTCAGTGCTGTATGATGTTGATGAACCTACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACCACACTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACGGGATTCCTTGGAGGCGTGAATTGGGCTCTATTAGTTGCTCGAATTTGCCAGCTTTACCCTAATGCAATCCCTAGTATGCTGGTTTCTCGATTCTTTAGGGTATATACACAATGGAGGTGGCCAAATCCTGTCATGCTGTGCACAATAGAGGAGAATGAACTGGGTTTCCCAGTTTGGGATCCTCGTAGAAACCCGCGGGACAGATATCACATTATGCCAATTATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCCGCAAGCACTCTTCGTGTTATGAAGGAACAGTTTCGCTATGGCAACAAGATTTGTGATGAAATTGAGCTCAATAAAGCCCAATGGAGTGCACTTTTTCAGCCATATTTCTTTTTCGAAGCCTACAAAAACTATTTACAAGTGGACATCCTTGCAGCAGACAATGATGACTTGTTAGCATGGAAAGGTTGGGTAGAATCTCGATTGAGGCAGCTCACCCTGAAGATAGAGCGGGATACAAATGGGATGTTGCAGTGTCATCCTTACCCACATGAGTATGCAGACACATCCAGACATTGTGCTCATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGAAAAAGGTCAAGAGGGACAACAATTTGATATACGTGGAACGGTTGATGAATTCAGGCAAGAAATAAATATGTATATGTACTGGAAGCCAGGGATGGAAATTTTTGTTTCCCATGTACGTCGAAAGCAGCTCCCTTTATTTGTATTTCCAGATGGTTACAAACGCAATCGGATGTCAAGGCACATAAGCCATTCAGCTGAAAAAATGGGTGAGGATGCCGCAAAGTCCAACCTAGGGTCTTCTGAAAGAAGTGTCAAGAGGAAAAATGACCATGAAATGTTGGATGAGAAGCTAGGCAAACCAGAGAAGAGGGCCTCTATCAGCCCGCAGAGGCTAGTGTGTGTCTCTCCAGAAAGTTGTTCATCTCAAATGAGTATTGATGGTACCAAAGGGGTTAGGTTAGCCAAGAATGCTGGCACCAAATGCGAAATTAAGTCATCTAATGGACTCCTAGAAAATGGAATAAGTACTGAAGGAGCTTACATGCATATTAGTGAAACAGGTGGTGTTCATCCCAAAAATGATAGTCAGAACTCAAGGTGTTCAGAAGTTCAGAATGAGAATGGAGTCAATAGGAACAAAGCTGGGGAAATGGATCTGGATTGCTTGGAAAGTGCAGAAACTGCATCTTGCAAAAGCTTGTCAAACTGTAAAGAGAGTGCTGTTGATATGGATCAACGACTAGACAATACTCATAATTTCCAAAGAACTGAATATTCAGATTATGTACCAACTGCGAGCTCCCAGGCCCTCAATTGCGAGGAAGATGAGTTTGAATTGAATCACATGACATTTGGGAGGTGA 2151 0.4417 MVVSDASNGGGSSSPPLVVEQTNTLGITKPISLAGPTDADLHRNAELEKFLLDSGLYESNEEAATRREVLQRLDQTVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCTIEENELGFPVWDPRRNPRDRYHIMPIITPAYPCMNSSYNVSASTLRVMKEQFRYGNKICDEIELNKAQWSALFQPYFFFEAYKNYLQVDILAADNDDLLAWKGWVESRLRQLTLKIERDTNGMLQCHPYPHEYADTSRHCAHSAFFMGLQRKEGEKGQEGQQFDIRGTVDEFRQEINMYMYWKPGMEIFVSHVRRKQLPLFVFPDGYKRNRMSRHISHSAEKMGEDAAKSNLGSSERSVKRKNDHEMLDEKLGKPEKRASISPQRLVCVSPESCSSQMSIDGTKGVRLAKNAGTKCEIKSSNGLLENGISTEGAYMHISETGGVHPKNDSQNSRCSEVQNENGVNRNKAGEMDLDCLESAETASCKSLSNCKESAVDMDQRLDNTHNFQRTEYSDYVPTASSQALNCEEDEFELNHMTFGR* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3117 716 Gene3D Beta Polymerase, domain 2 58 214 IPR043519 -
Ahy17g3117 716 Pfam Poly(A) polymerase predicted RNA binding domain 373 433 IPR007010 GO:0003723|GO:0043631
Ahy17g3117 716 Pfam Poly(A) polymerase predicted RNA binding domain 433 505 IPR007010 GO:0003723|GO:0043631
Ahy17g3117 716 Pfam Nucleotidyltransferase domain 99 175 IPR002934 GO:0016779
Ahy17g3117 716 Gene3D - 26 368 - -
Ahy17g3117 716 SUPERFAMILY PAP/OAS1 substrate-binding domain 221 370 - -
Ahy17g3117 716 SUPERFAMILY Nucleotidyltransferase 22 219 IPR043519 -
Ahy17g3117 716 PANTHER POLY A POLYMERASE 17 655 - -
Ahy17g3117 716 Pfam Poly(A) polymerase central domain 26 369 IPR007012 GO:0004652|GO:0043631
Ahy17g3117 716 CDD NT_PAP_TUTase 66 220 - -
Ahy17g3117 716 PANTHER NUCLEAR POLY(A) POLYMERASE 4 17 655 - -
Ahy17g3117 716 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 373 498 IPR011068 GO:0003723|GO:0016779|GO:0031123
Ahy17g3117 716 MobiDBLite consensus disorder prediction 514 554 - -
Ahy17g3117 716 Gene3D Poly(A) polymerase predicted RNA binding domain 373 488 - -
Ahy17g3117 716 MobiDBLite consensus disorder prediction 530 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3117 Ahy-Chr17 132849994 132854976 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3117 K14376 - gmx:100819294 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3117 17 132849994 132854976 Ahy8g0828 8 16376634 16382864 hybridization