Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3109 ATGGGTTTGCTTAACCTGAGGCTCAATTATAACGCTTCTTCTGCTGCTATTCAGTCTCCTTTCTCTTTCAACAATCACTCATGTATCACACTTTCTTCTGCTGGAGGAACGGAAGCAACTTTCAACTCAGCGAGGCTATCTTCGCTTTCGACCGTAAATGAAGAAGGAGAAGCATCCCAGAGAAGCTTTCCAACAGCATTCAGTTGTTTGTCATCTGAATTGGAAACCTTGGACAATGATTCTTTATACATAGAAGAAATCAAGGTGAAGAAGGGTAAGAGGTCTATTAGTAGTGTGCAAGAAATGCTTAATAATACACAAAGACAAAGGCATTTTGAAAAGGAGATATCAACAGCCTCCCTCAAATTTCAGTCTTTTAGAGCGATACATTATCGTTTGTTAATGGAAAATCTAGGCACTTTGGAACAAACTTTCGCTGATTCTGAGGCGATTAAATTGAAAAGTGACATTGTATTGCAACTTGGAAAGCTTGGAGCTCTGGAATTGTTCAATGTCTGTCTGTCGAGGTCTCTTGAACTGTCGTCACATGCCGTTGAACTCGGAGAGCACCAGAAGGAAAACAGGAAAATAGATGAGAAGATAGATAAAGTGTTTGTTAAGTCTACCAGGAAAAAACAGCATAAAAGAAGAACTCAGAAAGCATTTACTGCTATGGAAGTTCGGCTGCAGCCGTCGACTTCAAAAGCTGATGATAAGGAATATAGATTGCATTCCCTTCCTGCTTCTGTAAAGAAAGCTTCAAATCGTAAAAATACAAGAATAATGGTTGCTAGAAGGGAGGCAGAAATGTCAAAAGGAGTAAAGGTTCTCGCAGAGTTGGAGAAAATTCGAGAAGGAATAGAAGAGAGTACAAATCAAGTAGCAAGCTTGAAAAGCTGGGCAGAAGCAGCTGGAGTTCATGAGAAGGTGCTACAGCAGAAGTTGCATTACTGCCAACGTTGTCGTGACGAGCTTATACGAAGTACTCGTTCCTTGGTTGTTTACCTTGCAAGGAAGTACAGGGGTATGGGAATAGCACTGGAAGATCTACTTCAGGCAGGATATATAGGTGTTCTCCAGGGAGCTGTGAGATTTGACTATACAAGGGGTTATAGATTCTCAACTTATGTGCAGTATTGGATAAGGAAATCAATTTCCAGAATGGTGGAACGATATGCTCGAGAAATCGTAGTTCCTTGGTCATTGAGCAGGGCCATGAATCAGATACAGAAAGCACAAAAATCCCTGAAAATTACCTCCATGAAAAGCCCAGATGATCATGAAATCGCAAAGGCGACAGGTCTGTCTTTGGAAAAAATTAGATCAGCTGGAAATTGTCTGAGAGTTGTTGCTTCGACCAATCAGAAGATGGGAGACTCTCTTAGTGTAAAGTATACGGAATTTATGCCTGATATGTCAATAGAGAATCCTGAAGAAGCTGTGATGAAGCAACACATGAGAAAGGACTTATATGATCTCTTGAAAGGCTTGGATTCAAGAGAAAGAGAAATATTAACCCTCCGTTTTGGTCTTAGAGATCATCATTCAAAGTCACTTGAAGAAATAGGGAGATATTTCAAAGTTAGCAAAGAATGTGTGAGGAAGATAGAAAGGAAAGCTCTAACAAAATTAAGGAACAAAGCAGCTACATCAAATTTCAATTTTTATTTATTGGATTTAGATTCTTAG 1689 0.3961 MGLLNLRLNYNASSAAIQSPFSFNNHSCITLSSAGGTEATFNSARLSSLSTVNEEGEASQRSFPTAFSCLSSELETLDNDSLYIEEIKVKKGKRSISSVQEMLNNTQRQRHFEKEISTASLKFQSFRAIHYRLLMENLGTLEQTFADSEAIKLKSDIVLQLGKLGALELFNVCLSRSLELSSHAVELGEHQKENRKIDEKIDKVFVKSTRKKQHKRRTQKAFTAMEVRLQPSTSKADDKEYRLHSLPASVKKASNRKNTRIMVARREAEMSKGVKVLAELEKIREGIEESTNQVASLKSWAEAAGVHEKVLQQKLHYCQRCRDELIRSTRSLVVYLARKYRGMGIALEDLLQAGYIGVLQGAVRFDYTRGYRFSTYVQYWIRKSISRMVERYAREIVVPWSLSRAMNQIQKAQKSLKITSMKSPDDHEIAKATGLSLEKIRSAGNCLRVVASTNQKMGDSLSVKYTEFMPDMSIENPEEAVMKQHMRKDLYDLLKGLDSREREILTLRFGLRDHHSKSLEEIGRYFKVSKECVRKIERKALTKLRNKAATSNFNFYLLDLDS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3109 562 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 398 468 IPR013324 -
Ahy17g3109 562 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 13 557 - -
Ahy17g3109 562 PRINTS Major sigma-70 factor signature 497 509 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 PRINTS Major sigma-70 factor signature 349 362 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 PRINTS Major sigma-70 factor signature 518 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 PRINTS Major sigma-70 factor signature 373 381 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 PRINTS Major sigma-70 factor signature 533 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 Gene3D - 398 474 IPR036388 -
Ahy17g3109 562 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 321 547 IPR014284 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 Pfam Sigma-70 region 2 325 393 IPR007627 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 13 557 - -
Ahy17g3109 562 Pfam Sigma-70, region 4 493 546 IPR007630 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 Pfam Sigma-70 region 3 406 480 IPR007624 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 Gene3D - 475 557 IPR036388 -
Ahy17g3109 562 Gene3D - 172 394 - -
Ahy17g3109 562 CDD Sigma70_r4 487 545 - -
Ahy17g3109 562 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 264 394 IPR013325 GO:0003700|GO:0006352|GO:0006355
Ahy17g3109 562 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 457 554 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3109 Ahy-Chr17 132720004 132723711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3109 K03093 - gmx:100802522 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3109 17 132720004 132723711 Ahy17g3109 17 132720004 132723711 ECH