Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3099 ATGACATCGTCTAAGAGGCCAAATGCGGAGCCAAATGGGAAAGCGAAACGCCAAAAGTCAGGAACTGGTTTTCCGCCGTTGGATTTTGCTCCGGGAAGTGTTGTTTTCCGGTTGCTCTGCTCCGCGTCGAGGATTGGGAGTGTTATCGGCAAAGGTGGTGTCACCGTGACACAAATCCGACAGGAAACTGGTGTGAAGGTTAAGATTGAGGAAGCTGTACCTGGATGTGATGAGAGGGTTATTACTATTCTAGGTTCTGATAAGGAGACTGAGGAAGTCACTGACCAAGGAAGGGAGGTTAATAACAATAACAACAACAATAAAAATGATGATGATGAAGCTGAGAGCAAGGAGAAGGAGATTGGGGCAAAAGACGATGCAGACAATGATGAGGATAAGGGGTCTGTTCCGGTTGAAGATTTGAAGAGCGAGAAGGGGCATTCTGCCATTCGGAAGGCTCTCTCGCTGGTTTTTGAGAAGATGGTTGAAGGAATGGAGGAGACAACAGAGGGGGATAAAGAAGGTAGTAAATCTTTGTCCTTTGTTTTTAGGCTACTTGTCCTTTCTAGTCAAGTTGGATGCCTTCTGGGGAAAGGTGGTAGCGTAATAAAGCAAATGTCAGCTGATAGTGGGGCACAGATTCGGATCCTTCCAAGGGACAAACTTCCACTGTGTGCATCGGATTCTGATGAGCTTGTTCAGATCACGGGTGGAATTGATGTCGTCAGGAAAGCTCTTCAATCTGTTTCTCAACAACTTTTGGAAAATCCACCTCGGGATCATGAACCTCTTCGTGCCAATCCTACAGGACCATCTTCTCATTCATCTGGTCAATTCCCACCACATAACCGTTCTCTTGCTGCTCAAGGAGCGCCTTTTGCTGCAGGACCTCATGATATTTCTGTTTTTCATCCTGGTCCTCCTGTAATTCCCAAATTTCATGAAGGTGCCATACATGGACGCATGAGGCCTTCACAGGAGATGCTTACTTTCCGTTTATTGTGTCATGCTGAAAGAGTAGGAAATGTTATTGGTAAAGGTGGAGCAATCATAAAGGCTGTGCAACAGGAGACAGCTAGTGAAATTAAGGTTATAGAAGGCAGTCCAGATTCAGAGCATTGCATTATTGTCATATCTGGTCCAGCGCACCCAGATGATAGAGTATCTCCCGTGCAAGAGGCTGTATTTCGTGTGCAGAGCAGAATAGGAAGGTCTATACCTGATCCCAAAGAGCATAATATGTTAGCTAGGCTTCTTGTTTCTTCCAATCAAATAGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGTTATCAGGGGCCCATATCCGTATATTAGGCAAGGATAAGGTTCCAAAGTGTGCTTCAGAAGATGAAGAAGTAATTCAGATAAGTGGAGAAGTTGAGGCAGTGCACGATGCACTTCTGCAAGTAACCACAAGACTAAGACATCATTTCTTTCGTGATGCATTTCCATCTATCAATTATCCTTCCAATTCTCCATTTCTAGATCAAGGTCCTCCATTCCCACCTTACTTTGGAAGGCGAGGACTTTCACCACCACGGATGTATTCTAATCTAGGTCCACCTCCACACGGGGGTTTTCCCCTTGATGATGGTCCTCCTTTTATTAATAATATACGCAGACCAGGCATTCCTCCTCATTTATCCGAAAGGAAGCCTTGGGGTCCTCAGGGGTTACTAGAAGGTGGTGGACCCATGGGCTTGCCAGACTTTCCAGGAGGCCCTCATAGGAGAATTCCAGGATTTGCAAGTGGGGGCCAACCAATTATCACTAGTACCACAGTTGAAGTAGTTGTTCCTCGAAAGCTTGTGCCTGTAATTTATGGGGAGGATGGTGAATGCCTAAAACAAATACTTGAGATCTCTGACGCAAATATCAAATTTATGGATCCAAAGCCTGGAGCTGTGGAAACCAAGATTATAATATCAGGAACCCCGGAGCAAACTCATGCTGCCCAAAGTCTTATTCAGGCGTTTGTCTTGAGTGAGACAGAGTCTGGTTGA 2040 0.4534 MTSSKRPNAEPNGKAKRQKSGTGFPPLDFAPGSVVFRLLCSASRIGSVIGKGGVTVTQIRQETGVKVKIEEAVPGCDERVITILGSDKETEEVTDQGREVNNNNNNNKNDDDEAESKEKEIGAKDDADNDEDKGSVPVEDLKSEKGHSAIRKALSLVFEKMVEGMEETTEGDKEGSKSLSFVFRLLVLSSQVGCLLGKGGSVIKQMSADSGAQIRILPRDKLPLCASDSDELVQITGGIDVVRKALQSVSQQLLENPPRDHEPLRANPTGPSSHSSGQFPPHNRSLAAQGAPFAAGPHDISVFHPGPPVIPKFHEGAIHGRMRPSQEMLTFRLLCHAERVGNVIGKGGAIIKAVQQETASEIKVIEGSPDSEHCIIVISGPAHPDDRVSPVQEAVFRVQSRIGRSIPDPKEHNMLARLLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKVPKCASEDEEVIQISGEVEAVHDALLQVTTRLRHHFFRDAFPSINYPSNSPFLDQGPPFPPYFGRRGLSPPRMYSNLGPPPHGGFPLDDGPPFINNIRRPGIPPHLSERKPWGPQGLLEGGGPMGLPDFPGGPHRRIPGFASGGQPIITSTTVEVVVPRKLVPVIYGEDGECLKQILEISDANIKFMDPKPGAVETKIIISGTPEQTHAAQSLIQAFVLSETESG* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3099 679 ProSiteProfiles Type-1 KH domain profile. 413 482 - -
Ahy17g3099 679 SMART kh_6 327 403 IPR004087 GO:0003676
Ahy17g3099 679 SMART kh_6 32 102 IPR004087 GO:0003676
Ahy17g3099 679 SMART kh_6 412 487 IPR004087 GO:0003676
Ahy17g3099 679 SMART kh_6 603 673 IPR004087 GO:0003676
Ahy17g3099 679 SMART kh_6 179 254 IPR004087 GO:0003676
Ahy17g3099 679 MobiDBLite consensus disorder prediction 268 283 - -
Ahy17g3099 679 Gene3D K Homology domain, type 1 178 258 IPR036612 GO:0003723
Ahy17g3099 679 Gene3D K Homology domain, type 1 411 490 IPR036612 GO:0003723
Ahy17g3099 679 CDD PCBP_like_KH 35 86 - -
Ahy17g3099 679 CDD PCBP_like_KH 330 399 - -
Ahy17g3099 679 Gene3D K Homology domain, type 1 603 675 IPR036612 GO:0003723
Ahy17g3099 679 CDD KH-I 606 669 - -
Ahy17g3099 679 Coils Coil 100 120 - -
Ahy17g3099 679 MobiDBLite consensus disorder prediction 1 27 - -
Ahy17g3099 679 Pfam KH domain 330 382 IPR004088 GO:0003723
Ahy17g3099 679 Pfam KH domain 36 93 IPR004088 GO:0003723
Ahy17g3099 679 Pfam KH domain 606 669 IPR004088 GO:0003723
Ahy17g3099 679 Pfam KH domain 417 482 IPR004088 GO:0003723
Ahy17g3099 679 Pfam KH domain 183 249 IPR004088 GO:0003723
Ahy17g3099 679 Gene3D K Homology domain, type 1 32 102 IPR036612 GO:0003723
Ahy17g3099 679 Gene3D K Homology domain, type 1 326 405 IPR036612 GO:0003723
Ahy17g3099 679 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 408 491 IPR036612 GO:0003723
Ahy17g3099 679 MobiDBLite consensus disorder prediction 105 144 - -
Ahy17g3099 679 ProSiteProfiles Type-1 KH domain profile. 33 100 - -
Ahy17g3099 679 MobiDBLite consensus disorder prediction 87 144 - -
Ahy17g3099 679 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 604 674 IPR036612 GO:0003723
Ahy17g3099 679 MobiDBLite consensus disorder prediction 252 289 - -
Ahy17g3099 679 CDD PCBP_like_KH 417 483 - -
Ahy17g3099 679 ProSiteProfiles Type-1 KH domain profile. 180 249 - -
Ahy17g3099 679 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 328 403 IPR036612 GO:0003723
Ahy17g3099 679 CDD PCBP_like_KH 182 250 - -
Ahy17g3099 679 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 2 536 - -
Ahy17g3099 679 ProSiteProfiles Type-1 KH domain profile. 604 668 - -
Ahy17g3099 679 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 174 258 IPR036612 GO:0003723
Ahy17g3099 679 ProSiteProfiles Type-1 KH domain profile. 328 395 - -
Ahy17g3099 679 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 2 536 - -
Ahy17g3099 679 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 27 89 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3099 Ahy-Chr17 132592391 132596885 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3099 K21444 - gmx:100785136 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3099 17 132592391 132596885 Ahy17g3099 17 132592391 132596885 ECH
Ahy17g3099 17 132592391 132596885 Ahy8g0810 8 16060469 16064962 hybridization