Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3039 ATGCATTCCTCAAAAGCATTATTCTCACCATCCTCCTCCTCAACCTTCCTCTTCTCCTTCTCCTCCACGCCCCAACCACTGTCACGCGCCTTCTCTCACGCGCCGAAACCACAGCAGCTCAGAATGGAGCCTCTCCGCGCGGCGTCTCAGAGCAACAAAGAGGCCAAGCTGTGGGGTGGACGCTTCGAAGAGAGCGTCACGGAGGCCGTTGAGAGCTTCACTGAGTCGATCTCCTTCGACAAGCTTCTCTCTAAGTACGACATTATGGGAAGCAAAGCTCACGCTCAAATGCTCGCTCAACAGAGTTTGATTAGCGTGAAAGAAAGGGATGAGATTGTCAAAGGTCTTGAAGACATTGAGAGGCGCATTGCTAGTGGGGAGTTTCAGTGGAGGACGGACAGAGAGGACGTGCACATGAACATTGAGGCAGCGTTGATCGAGATGATTGGCGAGCCTGCGAAGAAGCTACACACTGCTCGGAGCAGGAACGATCAGGTCTTGACTGACTTCAGGCTGTGGTGTCGCGATGCCATTGATGGGATCATGGGGAGCATGAAGCGGCTTCAGGTGTCTCTGATTACCTTGGCTTTGAAGAATGAGGGCCTCATTGTCCCTGGCTACACACATTTGCAGCGTGCGCAGCCTGTTTTGCTGCAGCATCTTCTGCTGGCATATGTTGAACAGATTGACCGCGATATTGGTCGTCTTGTGGATTGTAGAGCTAGGATGAATTTCTGCCCCTTAGGTGCCTGTGCATTAGCTGGCACGGGGCTCCCGATTGATCGCTTCATGACTTCAGAGACCTTAGGATTTACTGCTCCCCTGAGGAATAGTATTGATGCAGTTTCTGACCGAGATTTTGTGATGGAGTTCCTTTCTGCTAATGCCATCACAGCGGTGCATCTTTCTCGGCTTGGTGAAGAATGGGTGTTGTGGGCTTCTGAGGAGTTTGGATTTATCACTCCAAGTGACTCTGTCTCTACAGGGAGTAGTATAATGCCTCAGAAAAAGAATCCAGACCCAATGGAGCTAGTCCGTGGAAAGTCTGCTAGGGTCATAGGAGATTTGGTTACTTTGCTTACATTGTGCAAAGGGCTCCCTCATGCATACAATCGTGATTTGCAGGAAGACAAAGAACCAGTATTTGACAGTGTTAAAACTATTTTGGGGATGCTTGAGGTGTCAGCGGAGTTTGCACTGAACATCACCTTCAATCGGGACAGAATACAAAAGGCTTTACCTGCTGGTCATCTTGATGCAACAACACTTGCCGATTACCTTGTTAACAAGGGAGTGCCATTTAGGACCTCTCATGATATTGTTGGAAGAGCCGTTGCCTTGTGTACATCAAAGAACTGCCAACTGTTGGACCTGAGTCTAGATGAGCTGAGAAGTATCAATCCAGTCTTTGATGAGCACGTTTATGAATATCTTGGAGTGGAAAACGCAATCAACAAGTTCAGCTCCTATGGTTCCACTGGGTCAGCTTGCGTTGCCAGCCAACTTGATTACTGGACCAAAAAGCTTGAAATCAAATGA 1539 0.488 MHSSKALFSPSSSSTFLFSFSSTPQPLSRAFSHAPKPQQLRMEPLRAASQSNKEAKLWGGRFEESVTEAVESFTESISFDKLLSKYDIMGSKAHAQMLAQQSLISVKERDEIVKGLEDIERRIASGEFQWRTDREDVHMNIEAALIEMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDGIMGSMKRLQVSLITLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQIDRDIGRLVDCRARMNFCPLGACALAGTGLPIDRFMTSETLGFTAPLRNSIDAVSDRDFVMEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPHAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALNITFNRDRIQKALPAGHLDATTLADYLVNKGVPFRTSHDIVGRAVALCTSKNCQLLDLSLDELRSINPVFDEHVYEYLGVENAINKFSSYGSTGSACVASQLDYWTKKLEIK* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3039 512 SUPERFAMILY L-aspartase-like 57 509 IPR008948 GO:0003824
Ahy17g3039 512 ProSitePatterns Fumarate lyases signature. 329 338 IPR020557 GO:0003824
Ahy17g3039 512 PANTHER ARGININOSUCCINATE LYASE 82 511 IPR009049 GO:0004056|GO:0042450
Ahy17g3039 512 Pfam Argininosuccinate lyase C-terminal 419 484 IPR029419 -
Ahy17g3039 512 PRINTS Argininosuccinate lyase family signature 155 177 - -
Ahy17g3039 512 PRINTS Argininosuccinate lyase family signature 364 383 - -
Ahy17g3039 512 PRINTS Argininosuccinate lyase family signature 285 309 - -
Ahy17g3039 512 PRINTS Argininosuccinate lyase family signature 196 216 - -
Ahy17g3039 512 PRINTS Argininosuccinate lyase family signature 329 345 - -
Ahy17g3039 512 PRINTS Argininosuccinate lyase family signature 247 263 - -
Ahy17g3039 512 Hamap Argininosuccinate lyase [argH]. 56 507 IPR009049 GO:0004056|GO:0042450
Ahy17g3039 512 PANTHER ARGININOSUCCINATE LYASE 82 511 - -
Ahy17g3039 512 Gene3D - 76 283 IPR024083 -
Ahy17g3039 512 Pfam Lyase 60 354 IPR022761 -
Ahy17g3039 512 CDD Argininosuccinate_lyase 76 509 IPR009049 GO:0004056|GO:0042450
Ahy17g3039 512 TIGRFAM argH: argininosuccinate lyase 57 507 IPR009049 GO:0004056|GO:0042450
Ahy17g3039 512 Gene3D Fumarase/aspartase (Central domain) 173 502 - -
Ahy17g3039 512 Gene3D - 414 486 - -
Ahy17g3039 512 PRINTS Fumarate lyase superfamily signature 156 174 IPR000362 -
Ahy17g3039 512 PRINTS Fumarate lyase superfamily signature 201 219 IPR000362 -
Ahy17g3039 512 PRINTS Fumarate lyase superfamily signature 285 312 IPR000362 -
Ahy17g3039 512 PRINTS Fumarate lyase superfamily signature 329 345 IPR000362 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3039 Ahy-Chr17 131401650 131404778 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3039 K01755 - gmx:100796544 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3039 17 131401650 131404778 Ahy17g3039 17 131401650 131404778 ECH