Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3018 ATGAGAACCTCAGGAATTTTCGGTAGCAGGCACAGCCGTGTCCCATTAGTATCATCATCATCTGTATCTTCTTCACTGCCATGGATATCTCCCCTTAAATTAGCAAAACCTCTAGAATCTAAACTAGACCCTCCTCCTGAAACCAGTGGCACTCCCCCCGAATCTCGGAAGAAACACAAATATATATCTCATGAATCCGCCATCAACTTGATCAAACGAGAAAAAGACCCACAACATGCCTTGAAAATATTTAATATGGTATCAGAACAAAAGGGCTTTAATCACAACAGTGCTACATATGGAATAATACTCGAAAAGCTTGCTCAGTCAAAGAAGTTCCAGGCTGTTGACCGGGTTCTGCATCAAATGACCTATGAAACTTGCAAGTTTCATGAGGGTATATTCATTAACCTCATGAAGCATCTTTCAAAATCCTCCTTACATGAAAAAGTGCTTCAGATATTTTTCTCCATTCAGCCAATCGTTCGGGAAAAGCCCTCGCCCAAAGCCATTAGCACTTGCCTCAATCTCCTGGTTGATTCGAATCAGGTTGATTTGGCACGACAATTGCTCTTGCATGCCAAGAGGAGTCTTACACATAGGCCGAATGTCTGCATATTTAACATCTTAGTGAAGTACCACTGCAAAAATGGGGATCTTGACTCTGCATTTGAAGTTGTAGAAGAAATGAAGAACTCCAAGTCATCCTATCCCAATTTAATTACATACTCAACCCTAATGGATGGCCTATGCCAAAATGGAAGGCTCAAAGAAGCTTTTGAGCTTTTTGAGGAAATGGTCTCAAAGGATCAGATCGTACCTGATCCCTTGACTTATAATGTTTTGATCAACGGATTTTGCCGTGGAGGTAAACCTGATCGTGCTAGAAATATAATCGAATTCATGAGAAGCAACGGATGCCATCCTAACGTTTATAATTACTCAGCCCTGGTGAATGGATTATGTAAAGCAGGGAAACTGCAAGAGGCAAAAGGGGTTTTGGATGAGATGAAGAGCGCAGGCTTGAAACCGGATGCAGTTAGCTACACTGCCTTGATTAATTTCTGTTGTAGGAACAAGCGAATCGACGAGGCTCTAGAGTTGCTTGAAGAAATGAAGGAAAATTCATGCCGGGCTGATACTGTTACATTCAACGTAATACTTGGAGGCCTGTGCAGAGAAGAAAGATACAAGGAGGCTTTGGATATGCTCGAGAGACTTCCGCTCGAGGGCATCTATATGAACAAAGGTAGTTACAGGATTGTGCTGAATTGTTTAACCCAAAGAGGTGAGTTGAAGAAGGCAAAGGAATTATTAGGTCTAATGGTTGGTAGGGGGTTTGTACCCCATTATGCTACCTCAAATGAATTATTGGTTCAACTTTGTAAGGCTGGGATGGTTAATGATGCTGCTATGGCACTCTTTGCCTTAGTGGAGATGGGATTCCAGCCAGGATCTGATTCCTGGGGGCATTTGATTGACCAAATTTGCAAAGACAGAAAACTGTTGTATGTTTTTGAGCTGCTTGATGAGCTTGTGATATCAAATTCATGA 1554 0.4183 MRTSGIFGSRHSRVPLVSSSSVSSSLPWISPLKLAKPLESKLDPPPETSGTPPESRKKHKYISHESAINLIKREKDPQHALKIFNMVSEQKGFNHNSATYGIILEKLAQSKKFQAVDRVLHQMTYETCKFHEGIFINLMKHLSKSSLHEKVLQIFFSIQPIVREKPSPKAISTCLNLLVDSNQVDLARQLLLHAKRSLTHRPNVCIFNILVKYHCKNGDLDSAFEVVEEMKNSKSSYPNLITYSTLMDGLCQNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCRGGKPDRARNIIEFMRSNGCHPNVYNYSALVNGLCKAGKLQEAKGVLDEMKSAGLKPDAVSYTALINFCCRNKRIDEALELLEEMKENSCRADTVTFNVILGGLCREERYKEALDMLERLPLEGIYMNKGSYRIVLNCLTQRGELKKAKELLGLMVGRGFVPHYATSNELLVQLCKAGMVNDAAMALFALVEMGFQPGSDSWGHLIDQICKDRKLLYVFELLDELVISNS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3018 517 Gene3D Tetratricopeptide repeat domain 396 516 IPR011990 GO:0005515
Ahy17g3018 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Ahy17g3018 517 MobiDBLite consensus disorder prediction 39 59 - -
Ahy17g3018 517 Gene3D Tetratricopeptide repeat domain 164 288 IPR011990 GO:0005515
Ahy17g3018 517 Gene3D Tetratricopeptide repeat domain 53 163 IPR011990 GO:0005515
Ahy17g3018 517 Gene3D Tetratricopeptide repeat domain 289 395 IPR011990 GO:0005515
Ahy17g3018 517 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 23 516 - -
Ahy17g3018 517 Pfam PPR repeat family 238 288 IPR002885 -
Ahy17g3018 517 Pfam PPR repeat family 344 393 IPR002885 -
Ahy17g3018 517 SUPERFAMILY TPR-like 42 274 IPR011990 GO:0005515
Ahy17g3018 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Ahy17g3018 517 SUPERFAMILY HCP-like 214 409 - -
Ahy17g3018 517 Pfam PPR repeat 305 338 IPR002885 -
Ahy17g3018 517 Pfam PPR repeat 201 231 IPR002885 -
Ahy17g3018 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Ahy17g3018 517 TIGRFAM PPR: pentatricopeptide repeat domain 314 346 IPR002885 -
Ahy17g3018 517 TIGRFAM PPR: pentatricopeptide repeat domain 278 311 IPR002885 -
Ahy17g3018 517 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Ahy17g3018 517 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Ahy17g3018 517 TIGRFAM PPR: pentatricopeptide repeat domain 206 236 IPR002885 -
Ahy17g3018 517 TIGRFAM PPR: pentatricopeptide repeat domain 418 449 IPR002885 -
Ahy17g3018 517 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Ahy17g3018 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Ahy17g3018 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Ahy17g3018 517 Pfam PPR repeat 418 447 IPR002885 -
Ahy17g3018 517 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 23 516 - -
Ahy17g3018 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Ahy17g3018 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3018 Ahy-Chr17 130890678 130895695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3018 203 513 Glycosyltransferase AT1G05670 28.939 2.07e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3018 - - mtr:MTR_3g100600 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3018 17 130890678 130895695 Ahy17g3018 17 130890678 130895695 ECH