Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2962 ATGGCCATGTGTAGGTGTGTCGATGTTGTTGATGTTTTGGTTGGGAAGAAGAAGAAAGACAAGGGTGCTGAACGGTCTTCAAAGAAAGGACACATTAAAACTCTACTTGTTAAAGTAGAAGAAGCTAAGACGTCCTCGGGTTCACCAGCTTGCGATGTGAAGCCACTCACCGGAGATGTTGTAGTTCCTTGTGATATCCCGAAGAATTCAAGGTGCAACATGAGGGTCATGAATCTTGAGAGTCCTCTAAAGACTGAGATTGAGGAAGCTTATGAAGGGGAAGACGAGCGTGAAGATTCGCATTCCCTCAAAAGGGATCTATCTGATATTGATCTCCAAGCTCATGAAGCTGCCGTGTCAAGGGAAGTAAGGTCGGATCGAAGTCCAGCAACGGATAAAGAGACAAAATACAGCGAAAAAAGCGGTGAACTAATGCAAAGTGGGCATGTCAGTGATCCTGGGATTATTGGGAGGGGAGACTTCTGGGATTCTCCCAAGCTCACTCGATCATGCTCAAACCTGGAAAGAAGGGATGTTCTTGGTAATACAATTCATCAATTCCCAGATTCAAAGTCACAATCTTTCGAGAATTTACAGGAACTTACAGCAGGTAAAGTGGCTGCTAATCTTGAAAGCCCCAGGTCTGTGATGACTCACTGCAGTGCTGATAGAGTTATGTTGAGAAGGCATTCCTCAAGCCAAGTTCTTCCTTCTGGAAGTAAGAGACTCTGGTGGAAGATGTTCCTCTGGAGCCATAGGAACATACATAGACCTATTCCAAGCAAATCAACACAGGTGAATCCTGGTGTGGCTGCAACGCACAATCCATACGGGTACTCTTCCGACACCCTTGAACCGAAGCACAAGCAGTCACCAAGAAATGTGGAATCACCCTCACCAAGGTCATCAAATGGTGAATACTTTCGCAAAAGCTATAGTGATAAAAACATTGATCACCAAAGGAGGAGCAGATTCCAGGAGGAGAGTTTCGGTTTTTGGCCACAGAATCAATGGGTAGCCTTCTCAGGAGGATCATCATCCTTCAATAGAGTGGAGGAGTGGGTGCATGATCTTGAAATTCAGCAGGTGCCTCCAGAGGTTGATTTTGATAATGACAATGTGGGAAACATTGAGTTCCCACCTTCTCCTAATGCTGGTAGATCAATGTCAAGAACCGTATCTCAGTTAAGTCACCATACAGATGCAAATCTTTCAAAGGAGATTCTGCATGCCAATAGTTTGGTCCAATCCCTAAATCCAGCCTCAACTGTGGCACATATATCAGGTGTTGGTATAAAAGCGATTCCTGGTATTTCACACTTCTCCAGTCTCCGCTCTGTCAATTTGTCCAACAATTTCATAGTTCAAATTGTGCCTGGACTTCTCCCAAAGGGTATTCATGCACTTAATTTGTCAAGAAACAAGATCAGCACCATTGAGGGGATTAGAGATTTAACCCGGTTACGAGTACTTGACTTGAGTTATAATCGCATCTCAAGAATTGGACAAGGTTTATCAAATTGCACACTTATCAAAGAGCTATATCTTGCTGGGAATAAGATAAGTGATGTTCAGGGACTACACAGATTACTGAAGCTAACAGTTCTGGATTTGAGCTTCAACAAGATCACAACAACAAAGGCATTAGGGGAACTTGTAGCTAACTACAACTCACTTCAGGCCTTGAATCTGCTTGGAAATCCAGTTCAAAACAACATCAGTGACGAGCAGTTGCGGAAATCAGTTTGCAGTCTTCTTCCAAAGCTTGGATACCTGAACAAGCAAGCCATCAAGCCTCAGAGGGCACGAGAAGTACTCACTGACAGTGTTGCCAAAGCTGCACTTGGTGACAGCAGCCGGAACTACAACCGAAAATCACCGAAGAGAGGCAACCATGGAGGTCCCAGTTCCTCAAATGCCCATAGAAGCAGTACTAGTGTTGTCCAGAAAAGTAAGAGCATGCCAAAGCTCCGAACAAGAAAGCATTAG 1989 0.4424 MAMCRCVDVVDVLVGKKKKDKGAERSSKKGHIKTLLVKVEEAKTSSGSPACDVKPLTGDVVVPCDIPKNSRCNMRVMNLESPLKTEIEEAYEGEDEREDSHSLKRDLSDIDLQAHEAAVSREVRSDRSPATDKETKYSEKSGELMQSGHVSDPGIIGRGDFWDSPKLTRSCSNLERRDVLGNTIHQFPDSKSQSFENLQELTAGKVAANLESPRSVMTHCSADRVMLRRHSSSQVLPSGSKRLWWKMFLWSHRNIHRPIPSKSTQVNPGVAATHNPYGYSSDTLEPKHKQSPRNVESPSPRSSNGEYFRKSYSDKNIDHQRRSRFQEESFGFWPQNQWVAFSGGSSSFNRVEEWVHDLEIQQVPPEVDFDNDNVGNIEFPPSPNAGRSMSRTVSQLSHHTDANLSKEILHANSLVQSLNPASTVAHISGVGIKAIPGISHFSSLRSVNLSNNFIVQIVPGLLPKGIHALNLSRNKISTIEGIRDLTRLRVLDLSYNRISRIGQGLSNCTLIKELYLAGNKISDVQGLHRLLKLTVLDLSFNKITTTKALGELVANYNSLQALNLLGNPVQNNISDEQLRKSVCSLLPKLGYLNKQAIKPQRAREVLTDSVAKAALGDSSRNYNRKSPKRGNHGGPSSSNAHRSSTSVVQKSKSMPKLRTRKH* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2962 662 MobiDBLite consensus disorder prediction 630 653 - -
Ahy17g2962 662 ProSiteProfiles Leucine-rich repeat profile. 532 553 IPR001611 GO:0005515
Ahy17g2962 662 MobiDBLite consensus disorder prediction 295 310 - -
Ahy17g2962 662 MobiDBLite consensus disorder prediction 259 313 - -
Ahy17g2962 662 MobiDBLite consensus disorder prediction 616 662 - -
Ahy17g2962 662 ProSiteProfiles Leucine-rich repeat profile. 510 531 IPR001611 GO:0005515
Ahy17g2962 662 MobiDBLite consensus disorder prediction 90 140 - -
Ahy17g2962 662 PANTHER NISCHARIN RELATED 12 660 - -
Ahy17g2962 662 SUPERFAMILY Outer arm dynein light chain 1 432 598 - -
Ahy17g2962 662 MobiDBLite consensus disorder prediction 259 280 - -
Ahy17g2962 662 SMART LRR_sd22_2 530 551 - -
Ahy17g2962 662 SMART LRR_sd22_2 485 507 - -
Ahy17g2962 662 SMART LRR_sd22_2 508 529 - -
Ahy17g2962 662 SMART LRR_sd22_2 463 484 - -
Ahy17g2962 662 Pfam Leucine rich repeat 443 498 IPR001611 GO:0005515
Ahy17g2962 662 MobiDBLite consensus disorder prediction 90 150 - -
Ahy17g2962 662 ProSiteProfiles Leucine-rich repeat profile. 487 509 IPR001611 GO:0005515
Ahy17g2962 662 ProSiteProfiles Leucine-rich repeat profile. 465 486 IPR001611 GO:0005515
Ahy17g2962 662 Gene3D Ribonuclease Inhibitor 507 603 IPR032675 -
Ahy17g2962 662 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 12 660 - -
Ahy17g2962 662 SMART LRR_typ_2 441 464 IPR003591 -
Ahy17g2962 662 SMART LRR_typ_2 485 508 IPR003591 -
Ahy17g2962 662 SMART LRR_typ_2 530 552 IPR003591 -
Ahy17g2962 662 Gene3D Ribonuclease Inhibitor 384 506 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2962 Ahy-Chr17 129791035 129794699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2962 436 576 Receptor kinase-like Gene Family AT4G08850 34.211 4.49e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2962 - - gmx:100810094 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2962 17 129791035 129794699 Ahy17g2962 17 129791035 129794699 ECH
Ahy17g2962 17 129791035 129794699 Ahy8g0667 8 13125030 13128685 hybridization
Ahy17g2962 17 129791035 129794699 Ahy17g2962 17 129791035 129794699 PCT
Ahy17g2962 17 129791035 129794699 Ahy8g0667 8 13125030 13128685 PCT
Ahy8g0667 8 13125030 13128685 Ahy17g2962 17 129791035 129794699 PCT