LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy17g2864	ATGAAAGCTGCAACCGAACAATCCACTGTGGAGGGCTTTGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGTGGAAAAGGAGAAGAAGAAAAAACGACGTTCCAATCGTCGTTCCAAACAAAACCCTACTTCCTCCTCAGCGAACGAGATCTGTAGCGTATCGTCGGAATTCTTTGGTGACGGCACTGCGGCGCCTACTCCGACGGCTTCCCCAATGAAGCAGCAAGGTGACAATGCTCCTTACTGTTACGATCAGCAACACGATGATACAACTTTTGTTTCGATTCCGGCAGCGGCAGCCCCAATGCATATCAACGAGCAATCGCCGCCGCAATTCGTCGATGCGCAAACACAAGATTCATGGAATGGTTGGAACGGAGATTTGGTCCCTTCTCCCCCTCAGATAGGGTTTTGCCCCCAAAGGTGTTATTTTAGTCCACACTGGCCAATGGAAGCTGTTGAGATGGCACTTGAGAAGGGTGATGTTTTTAAAGCTTCCTTTCGAGTGAATGCTCACAACAGACTTGAGGCATACTGCAAAGTTGACGGATTGCCAACAGATGTACTCATTAGCGGAATTCCAGCCCAGAACAGAGCTGTGGAAGGTGACATTGTTGCTATTACAATGGATTCATTCTCATCGTGGACAAAAATGAAAGGATCTAACAGAACTTGCAACAATTATGCAACACCAGAAGATTGTAGTCTCCTCAGAGAAGCTGATGATGTGGCTGGCAATATCTATAAAGGAAAAGGCGAGTTAGATAAAGATAAAGATACCAATTATGACTCTGCTGATTGCAGAAACTGCCCTAGTCAAAACCAGGAGGATACTGAGGTCTATCCCAACCCTAATAAAAGTTGTCATTTTCCTGAAAAGAAGTATGCCTATGAAGATAGTGGTTCCCTGGGTCCAGTTTCACATTTAGATCCAGTTAGACCTGCCAATGAAAGTTTTGATGGGCAGAACAATGCTGCTTTTGAATCTTTGAATATGAGTTCTTGTAGCAAACAAATTGAAGTAATCAGTGCAGTGCAAAAGATGTGCTCCTTAGTTAATGCTTTCCCTTCCAAAAGACCAACTGCCAGGGTGGTTGCTATAATTGAGAAGTCTCCACGTCGAGAGCGCATTGTAGGTCAACTCAATGTGAAGCAGTGGATTTCTGTCAAGGGTGTAAGCAGAAAAGATGCAAAGAAAAATAAGAATCTGGTTTCTGATAATGAGTACATCCAGTTGACACCAATTGATCCAAAATTTCCTAAAATGATGCTTTTTGTTAGAGATTTGCCAGAACACATTAAGAAAAGACTACAAAGTGGTGATGTGACAACTGAAATGGATCTGATAGCAGCACAACTTTATGATTGGGGAGAAGAGAGTCTTTTTCCCAGAGCTCACATCTTGCATGTGTTTGGAAAAGGTAGCAAAGTTCAGACACATTTAGATGCAATTCTGTTTCAGAATACGATTTGTGAGTCTGAATTTTCACCTGAAGCTATGACTTGCCTACCATGTTTTCCATGGGAGGTGCCAGAAAAGGAATTGCAGAGTAGACTGGATCTTAGAAATCTGTGCATATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCACTGTCGATTGAGAAGTTACCTAATGGAAATTGTAGAGTAGGTGTCCACATTGCCGATGTATCATACTTTGTTTTACCAGGCACTGTCTTAGATGATGAGGCTCAGTTTAGGTCAACAACTGTCTATATGTTGCAAAAAAAGATACCAATGTTACCCGCATTATTTTCAGACAATATAGGCTCACTTAATCCTGGAGTGGATCGAGTGGCGGTTTCAATGCTCCTTGACATAAATCCTGCTGGGGATGTTGTGAACCGTTGGATTGGTCGTAGTGTTATCCAGTCTTGTTGTAAGCTTTCATACGAACTTGCTCAGGATATTATTGATGGGGCAGTTGATTTTGAAAGTTCAAACATCATAGGAGAGAGCTACCCAAAGGTGCATGGTCAATTTGGATGGCCTGACATTATTACTTCTGTGAAGAGCTTATGTGAAATTTCAAATGTTTTGAAACATAAGAGGTTCAATGATGGGGCTCTAAGGCTTGAAAATCCTAAAGTTGCTTTCCTGTTTGATGAGTATGGACTTCCTTATGACCTTATACTTTCTGAACGGAAAGAATCAAATTTTCTTGTTGAGGAATTTATGCTTTTGGCCAATACAACAGCAGCTGAAGTCATTTGTAGAGTTTATCCTGATAATGCATTATTGCGAAGGCATCCTGAACCTAATATGCGAAAACTGGGAGAGTTTGTGGCATTCTGTCAGAAGCATGGTTTAAAATTGGACACATCTTCGTCTGGCCAGTTCCATCGGTCACTAGATCTGATTAAGGAAAAGCTGAAGGATGACTCTGTGCTTTTTGATATTCTTATTTCCTATGCGACAAGACCAATGCAGTTGGCATGTTACTTCTGTAGTGGTCAGTTAAAGGAAAGGAAGCATGAGTGGGGTCATTATGCATTAGCTGTTCCTTTTTACACTCACTTTACATCACCACTGCGGCGGTATCCTGATATTGTTGTTCATAGGACACTACTTGCTGCTTTGGAGGCTGAGGAATTATATCTAAAGCATCGTAAGGCATTGCTAGTTAACAAGGAAGAGGAATTGCAGCGATGTTTCACAGGCATTATCTTTGATAAGAATGCTGCAGAATCTGTGGAAGGCAGGGAAGCTCTATCAGCTGCAGCTTCGAAACATGGAGTCCCATCCACGGAAGTACTTGCAGATGTTGCTACTTATTGCAATGAGAGAAAACTAGCCAGTCGAAATGTTAAAGATGCTTGTGATAAACTTTACATGTGGCATTTCTTGAAGAAGGAGATCTTATTGTCTGAAGCAAGGGTTCTGGGACTGGGCCCAAGATTCATGTCAATCTATATTCAGAAGCTAGCCATTGAGCAACGCATCTATTATGATGAAGTTGAAGGGTTATCAGTGGAGTGGCTCGAAGCAACATCATCGGTGGTGCTAAGTATGTCTGCTCATAGGCGTGCATTCCGGAGGGGTAGCCATAATAAATGGAGGGCGTTTGAAGAAGTTGCTTTCGTGGTTGATCCATATGACCTGAAAGTTGCATCGGACGGTTCTGATGGATGTGAGAACAGGGATCCCAATTCGAGGACCGAAATTGACCCTGCAGTTTTCCCTCTCACGGTACATCTTCTCTCAACAATTCCGGTGGTACTCCATGCTGTTGGTGGTGATGATGGACCCCTTGAAATTGGGGTGAGGCTGTACATGAGCTCGTATTACGGGTAA	3345	0.42	MKAATEQSTVEGFDNNNNNNNNNNNNNNNNVEKEKKKKRRSNRRSKQNPTSSSANEICSVSSEFFGDGTAAPTPTASPMKQQGDNAPYCYDQQHDDTTFVSIPAAAAPMHINEQSPPQFVDAQTQDSWNGWNGDLVPSPPQIGFCPQRCYFSPHWPMEAVEMALEKGDVFKASFRVNAHNRLEAYCKVDGLPTDVLISGIPAQNRAVEGDIVAITMDSFSSWTKMKGSNRTCNNYATPEDCSLLREADDVAGNIYKGKGELDKDKDTNYDSADCRNCPSQNQEDTEVYPNPNKSCHFPEKKYAYEDSGSLGPVSHLDPVRPANESFDGQNNAAFESLNMSSCSKQIEVISAVQKMCSLVNAFPSKRPTARVVAIIEKSPRRERIVGQLNVKQWISVKGVSRKDAKKNKNLVSDNEYIQLTPIDPKFPKMMLFVRDLPEHIKKRLQSGDVTTEMDLIAAQLYDWGEESLFPRAHILHVFGKGSKVQTHLDAILFQNTICESEFSPEAMTCLPCFPWEVPEKELQSRLDLRNLCIFTIDPSTATDLDDALSIEKLPNGNCRVGVHIADVSYFVLPGTVLDDEAQFRSTTVYMLQKKIPMLPALFSDNIGSLNPGVDRVAVSMLLDINPAGDVVNRWIGRSVIQSCCKLSYELAQDIIDGAVDFESSNIIGESYPKVHGQFGWPDIITSVKSLCEISNVLKHKRFNDGALRLENPKVAFLFDEYGLPYDLILSERKESNFLVEEFMLLANTTAAEVICRVYPDNALLRRHPEPNMRKLGEFVAFCQKHGLKLDTSSSGQFHRSLDLIKEKLKDDSVLFDILISYATRPMQLACYFCSGQLKERKHEWGHYALAVPFYTHFTSPLRRYPDIVVHRTLLAALEAEELYLKHRKALLVNKEEELQRCFTGIIFDKNAAESVEGREALSAAASKHGVPSTEVLADVATYCNERKLASRNVKDACDKLYMWHFLKKEILLSEARVLGLGPRFMSIYIQKLAIEQRIYYDEVEGLSVEWLEATSSVVLSMSAHRRAFRRGSHNKWRAFEEVAFVVDPYDLKVASDGSDGCENRDPNSRTEIDPAVFPLTVHLLSTIPVVLHAVGGDDGPLEIGVRLYMSSYYG*	1115

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy17g2864	1114	Gene3D	-	146	240	-	-
	Ahy17g2864	1114	SUPERFAMILY	Nucleic acid-binding proteins	149	377	IPR012340	-
	Ahy17g2864	1114	MobiDBLite	consensus disorder prediction	1	57	-	-
	Ahy17g2864	1114	PANTHER	DIS3-LIKE EXONUCLEASE 2	15	1112	-	-
	Ahy17g2864	1114	SMART	RNB_2	525	879	IPR001900	GO:0003723\|GO:0004540
	Ahy17g2864	1114	Pfam	Dis3-like cold-shock domain 2 (CSD2)	416	495	IPR041505	-
	Ahy17g2864	1114	PANTHER	RIBONUCLEASE	15	1112	-	-
	Ahy17g2864	1114	MobiDBLite	consensus disorder prediction	68	87	-	-
	Ahy17g2864	1114	SUPERFAMILY	Nucleic acid-binding proteins	368	497	IPR012340	-
	Ahy17g2864	1114	Coils	Coil	17	48	-	-
	Ahy17g2864	1114	Pfam	RNB domain	525	878	IPR001900	GO:0003723\|GO:0004540
	Ahy17g2864	1114	SUPERFAMILY	Nucleic acid-binding proteins	485	968	IPR012340	-
	Ahy17g2864	1114	ProSitePatterns	Ribonuclease II family signature.	846	870	IPR022966	-
	Ahy17g2864	1114	Hamap	DIS3-like exonuclease 2 [DIS3L2].	33	1089	IPR028591	GO:0000175\|GO:0034427
	Ahy17g2864	1114	Gene3D	-	396	482	-	-
	Ahy17g2864	1114	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy17g2864	Ahy-Chr17	127902516	127908935	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy17g2864	K18758		-	gmx:100815252	1395.95

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g2864	17	127902516	127908935	Ahy17g2864	17	127902516	127908935	ECH