Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2677 ATGGCGGCTATGGAGCTCAAGCACTGCCTCCTCCATGGCCTCAACTCCTTCAACCACCTCAGGACCGCCCACTGTCGCCTCCTCCGACTCTACATCGACCACAATAACTACCTTCTCAACATCATCCTCCAGCATTCATTTTTCTTTCGCAACATGCCCTACGCCAAGCGCATCTTCTCCCAATCCAAGAACCCTAACATATACCTCTTTAACACTATGATCCGCGGAACGGTCTCCAACGACTCCTTCGACGACGCTGTTCTGTTTTACAACTCAATGCGCAACGCCGGGTTCTTGCCAGACAACTACACGTTCACTTTTGTACTCAAAGCGTGTGCCAGGTTGGCGAATTTTCTGTTTGGCGTCAAGCTCCAGTCGCTTGTTGTGAAAATGGGATTTGATTGTGACGTGTTTGTCAAGACAAGTCTTGTTTGTTTGTATTCGAAATGTGGGTACTTAAAGGATGCACGGAAGCTGTTTGATGATATTCCGGAGAAGAATGTTGTTTCGTGGACCGCTATTATCTGTGGGTATATTGGATGCGGCCTTCACGAGGAAGCAATTGGTTTGTTTAGGGAGTTGTTAGAGGTGGGCGTGAAGCCGGATAATTTCACTCTCGTTCGGGTTTTGTATTCGTGTTCTCAGTTAGGGGACTTGGCTAGTGGAGAGTGGATTGATAAGTATATAACTGAGTGTGGTTTCCATAGGAATGTGTTTGTGTTGACTTCTTTGGTTGACATGTATGCCAAGTGCGGGAGCATGGAGAAGGCGCGACAGGTTTTTGATGGAATGGTTGAGAGAGATATTGTTTGTTGGAGTGCCATGATTCAGGGCTATGCATCCAACGGGCTTCCTAAGGAAGCACTTGACTTGTTCTTTGAGATGCAGAGGGAGAATCTGAGGCCTGATTGCTATGCCATGGTGGGAGTTCTTTCTGCATGTGCGAGGTTGGGAGCACTGGAGTTAGGGAATCAGGTTAAGGGATTGTTGGATGCTGATGAGTTTTTGTTGAATCCTGTACTAGGGACTGCCTTGATTGACTTTTATGCTAAATGTGGAAACATTGCACAAGCGGTGGATATTTTCAGAATGATGAAGGGAAAGGATCGTGTGGTGTTCAACGCCATAATTTCTGGACTGGCTATGAATGGACATGTTCGGGCCACATTTGGGGTATTTGGACAAATGGAGAAGTATGGAATTCAGCCAGATGGGAATACTTTTGTTGGCTTACTTTGCGGGTGTACCCATGCTGGTTTGGTTAATGATGGTCAACGATATTTCGATAGCATGAGTCATGTCTTTTCTTTAAGTCCTACTATTGAGCATTATGGATGCATGGTGGATCTTTTATCCCGTGCAGGCTTGTTGGTTGAAGCACATAATTTGATCAAGAGTATGCCAATGAAACTGAATACTATTGTTTTGGGGGCATTATTGGGAGGATGTAGGTTGCATTGTGATATTAAATTGGCAAAACCCGTGTTAAAGCAGCTGATTGAGTTAGAACCATGGAATTCAGGACATTATGTTCTCTTATCAAATATATATTCAGCAAGTCATAGATGGGATGAAGCAGAAAAAGTTAGGTTAACGCTAAACGAGAAAGGAATGCAAAAATTACCTGGGTGTAGTTGGGTTGAAGTGGATGGGGTTGTTCATGAATTCCTTGTAGGAGATACTTCCCATCCTATGTCATCGAAGATATATGAAAAACTTGAAAGTTTGTTTAAGGAATTGAGAGAAGTCGGTTATAGTCCAATTACTGAGTTTGTGCTCTTTGATATAGAGGAAGAGGAGAAGGAGTACTTCCTTGGCTGTCATAGTGAGAAATTAGCCGTTGCATTTGCCCTGATCAATACTGCGGCAAATGACATCATTCGTGTTGTTAAAAATCTACGCGTATGTGGTGATTGTCATGAGGCAATAAAACTCATTTCCAAAGTTACAGGGAGAGAGATAATCATTAGGGATAATAATAGATTCCATTGTTTCAGAGAAGGTTCATGTTCTTGTGGAGATTATTGGTAA 2031 0.4328 MAAMELKHCLLHGLNSFNHLRTAHCRLLRLYIDHNNYLLNIILQHSFFFRNMPYAKRIFSQSKNPNIYLFNTMIRGTVSNDSFDDAVLFYNSMRNAGFLPDNYTFTFVLKACARLANFLFGVKLQSLVVKMGFDCDVFVKTSLVCLYSKCGYLKDARKLFDDIPEKNVVSWTAIICGYIGCGLHEEAIGLFRELLEVGVKPDNFTLVRVLYSCSQLGDLASGEWIDKYITECGFHRNVFVLTSLVDMYAKCGSMEKARQVFDGMVERDIVCWSAMIQGYASNGLPKEALDLFFEMQRENLRPDCYAMVGVLSACARLGALELGNQVKGLLDADEFLLNPVLGTALIDFYAKCGNIAQAVDIFRMMKGKDRVVFNAIISGLAMNGHVRATFGVFGQMEKYGIQPDGNTFVGLLCGCTHAGLVNDGQRYFDSMSHVFSLSPTIEHYGCMVDLLSRAGLLVEAHNLIKSMPMKLNTIVLGALLGGCRLHCDIKLAKPVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKVRLTLNEKGMQKLPGCSWVEVDGVVHEFLVGDTSHPMSSKIYEKLESLFKELREVGYSPITEFVLFDIEEEEKEYFLGCHSEKLAVAFALINTAANDIIRVVKNLRVCGDCHEAIKLISKVTGREIIIRDNNRFHCFREGSCSCGDYW* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2677 676 TIGRFAM PPR: pentatricopeptide repeat domain 371 404 IPR002885 -
Ahy17g2677 676 TIGRFAM PPR: pentatricopeptide repeat domain 241 271 IPR002885 -
Ahy17g2677 676 TIGRFAM PPR: pentatricopeptide repeat domain 270 304 IPR002885 -
Ahy17g2677 676 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Ahy17g2677 676 TIGRFAM PPR: pentatricopeptide repeat domain 69 101 IPR002885 -
Ahy17g2677 676 Pfam DYW family of nucleic acid deaminases 584 676 IPR032867 GO:0008270
Ahy17g2677 676 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 3 669 - -
Ahy17g2677 676 Gene3D Tetratricopeptide repeat domain 9 123 IPR011990 GO:0005515
Ahy17g2677 676 Gene3D Tetratricopeptide repeat domain 224 331 IPR011990 GO:0005515
Ahy17g2677 676 Gene3D Tetratricopeptide repeat domain 124 223 IPR011990 GO:0005515
Ahy17g2677 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Ahy17g2677 676 Pfam PPR repeat 443 468 IPR002885 -
Ahy17g2677 676 Pfam PPR repeat 343 368 IPR002885 -
Ahy17g2677 676 Pfam PPR repeat family 166 206 IPR002885 -
Ahy17g2677 676 Pfam PPR repeat family 268 316 IPR002885 -
Ahy17g2677 676 Pfam PPR repeat family 369 415 IPR002885 -
Ahy17g2677 676 Pfam PPR repeat family 65 114 IPR002885 -
Ahy17g2677 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 66 100 IPR002885 -
Ahy17g2677 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Ahy17g2677 676 Gene3D Tetratricopeptide repeat domain 343 575 IPR011990 GO:0005515
Ahy17g2677 676 Pfam E+ motif 553 580 IPR046849 -
Ahy17g2677 676 Pfam E motif 486 548 IPR046848 -
Ahy17g2677 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 267 IPR002885 -
Ahy17g2677 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Ahy17g2677 676 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2677 Ahy-Chr17 124043802 124048344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2677 38 676 Glycoside Hydrolase AT3G49170 36.883 1.15e-147 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2677 - - gmx:100799205 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2677 17 124043802 124048344 Ahy17g2677 17 124043802 124048344 ECH