Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2583 ATGGGGTGCAAGTATTCAAAGAAAGTCATAAATAAAGTACCGGGTTACGAGGAACCCATTGTTCTTGCTTCTCAGACACCTTGTGAGTATCCATCATCAGCTGTTAATGTGAGTGAAGTTGAGGCCTTATATGAGCTTTACAAGAAGTTGAGCAATTCAATTATTGCAGATGGTCTTATTCACAGGGAAGAATTCCAACTTGCACTCTTCAGGAATAAAAACAAGAGAAATCTGTTTGCGGACAGGATTTTTGATCTATTTGATATCAAGAAAAATGGGGTCATTGAGTTTGGAGAATTTGTTCGATCATTGGGTGTATTTCACCCAGATGCATCTATGGAAGACAAGATCAAATTTGCTTTTAGGTTATATGATCTAAGGCAGACAGGGTATATTGAACGTGAAGAGTTGAAGGAGATGGTGTTGGCACTTCTACACGAGTCTGATCTTGTGCTTTCAGTTGATATCGTGGAATCCATCGTGGATAAGACTTTTAGTGATGCTGATACAAAAGGTGATGGAAGGATTGATCAGGATGAGTGGAAAGCATTTGTGTCTAAGCATCCATCCTTGATAAAGAACATGACTCTACCATATCTAAAGGATATAACCTTAGCATTTCCCAGTTTTGTTGTAAATTCAGAGGTTGATGATGCAGATGTATGTGTATGA 672 0.3839 MGCKYSKKVINKVPGYEEPIVLASQTPCEYPSSAVNVSEVEALYELYKKLSNSIIADGLIHREEFQLALFRNKNKRNLFADRIFDLFDIKKNGVIEFGEFVRSLGVFHPDASMEDKIKFAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSVDIVESIVDKTFSDADTKGDGRIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVNSEVDDADVCV* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2583 223 SUPERFAMILY EF-hand 35 210 IPR011992 -
Ahy17g2583 223 PRINTS Recoverin family signature 83 104 - -
Ahy17g2583 223 PRINTS Recoverin family signature 130 148 - -
Ahy17g2583 223 PRINTS Recoverin family signature 176 196 - -
Ahy17g2583 223 SMART efh_1 116 144 IPR002048 GO:0005509
Ahy17g2583 223 SMART efh_1 160 188 IPR002048 GO:0005509
Ahy17g2583 223 SMART efh_1 79 107 IPR002048 GO:0005509
Ahy17g2583 223 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 220 - -
Ahy17g2583 223 CDD EFh 116 186 IPR002048 GO:0005509
Ahy17g2583 223 Pfam EF-hand domain pair 57 102 IPR002048 GO:0005509
Ahy17g2583 223 Pfam EF-hand domain pair 114 184 IPR002048 GO:0005509
Ahy17g2583 223 Gene3D - 31 219 - -
Ahy17g2583 223 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Ahy17g2583 223 PANTHER CALCINEURIN B 1 220 IPR045198 GO:0005509|GO:0019722|GO:0019900
Ahy17g2583 223 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Ahy17g2583 223 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2583 Ahy-Chr17 121658568 121662958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2583 32 221 EF-hand Containing Proteins AT5G24270 73.158 5.56e-101 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2583 K06268 - mnt:21390233 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2583 17 121658568 121662958 Ahy17g2583 17 121658568 121662958 ECH
Ahy17g2583 17 121658568 121662958 Ahy8g0369 8 7549569 7553937 hybridization