Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2343 ATGAAAATCTTTTGTTTGGGCTTAGGCCAGTTTCAGTTCCCCAAGGCCCAAAAAGAGCATTGTAGTAGCAGTCTAGCAGAAAAGAGGAAAGCAGCTGCACTGGGCCTTGTTGCAAGCGGAAGGAAAATGATGTTGAGTCGGCGGGTGGCCGCAGCACTGCCGTTCCGGTTCGCCGCTCCTGCCGCGAACCAAGTTCCCATGCCAAAGCACCACCTTCCTCTTATATCCTTCCATCCCGAAAACGTTGCCGTTTTATGCTCCAGATCCAACTCCAGCTTAAGTCAACAATCGGAAACGGAGCATGTTGACTACTCACTGTTTCGGACGCAGCAGACTAACCTCAAACCAGGCCTTTATCTCGTTGGAACACCAATTGGAAATCTCGAAGATATCACCTTTAGGGCTCTTCGCGTGCTGAACTCTGCAAATGTGATTCTCTCGGAAGATACGAGGCACTCTGGCAAGTTGCTTCATCACTACAACATCAAAACTCCCCTCATGAGTTATCACAAGTTCAACGAGTCGCAAAGGGAGCAACTTGTGTTGAAGAGGCTCAAAGAAGGCGAGATTGTGGCCCTCATATCTGATGCTGGAACTCCAGGCATCAGTGATCCTGGCATGGAATTGAATGGATTAGTGCAGGCCAAATTATGTATTAGTGAAAATATCCTTGTTGTTCCAATCCCTGGTCCCTGTGCTTTGGTATCAGCTCTTTCTGCTTCGGGTTTGCCTACTCACGAGTTCACATTTGTTGGTTTTCTTCCAAAGCATTCAGGATCAAGAAGGAAGAGGCTTATGTCTTTGGCAGATCAAACAGCTACACAGATATTTTATGTTCCTCCTCACAAGCTTTCCCAATTTCTTGAAGAGGCTTCTTCTATATTTGGTGATGCAAGGCAATGTGTCATTGCTCGGGAAATGACCAAGTTACATGAAGAGTTTTGGCGTGGTACGGTAAGAGAGGCCAAGGAAGTCTTTTTGATGCGGCAGCCGAAGGGAGAACTAACCATATTGATTGAAGGGCAAACAAGTTCTAAAGTGGAACCTCCATCAGACAGTGAGCTTGAAGATGAACTAAGAGAATTGATTGCAAGTGGCGAGACTCTATCCACGGCTGTGAAATTGGTTGCTGGCAGAACATCAGCGAGTAAAAAGACTATATATTCACTTGCATTAAAAACATTTGGAAAGCAGCTTCAAGGGGAAGACGATTCAAACTAG 1221 0.4595 MKIFCLGLGQFQFPKAQKEHCSSSLAEKRKAAALGLVASGRKMMLSRRVAAALPFRFAAPAANQVPMPKHHLPLISFHPENVAVLCSRSNSSLSQQSETEHVDYSLFRTQQTNLKPGLYLVGTPIGNLEDITFRALRVLNSANVILSEDTRHSGKLLHHYNIKTPLMSYHKFNESQREQLVLKRLKEGEIVALISDAGTPGISDPGMELNGLVQAKLCISENILVVPIPGPCALVSALSASGLPTHEFTFVGFLPKHSGSRRKRLMSLADQTATQIFYVPPHKLSQFLEEASSIFGDARQCVIAREMTKLHEEFWRGTVREAKEVFLMRQPKGELTILIEGQTSSKVEPPSDSELEDELRELIASGETLSTAVKLVAGRTSASKKTIYSLALKTFGKQLQGEDDSN* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2343 406 Gene3D - 230 347 IPR014776 GO:0008168
Ahy17g2343 406 SUPERFAMILY Tetrapyrrole methylase 116 339 IPR035996 GO:0008168
Ahy17g2343 406 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 118 322 IPR000878 GO:0008168
Ahy17g2343 406 Gene3D - 103 229 IPR014777 GO:0008168
Ahy17g2343 406 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 108 403 IPR008189 GO:0008168
Ahy17g2343 406 CDD RsmI 119 340 IPR008189 GO:0008168
Ahy17g2343 406 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 117 341 IPR008189 GO:0008168
Ahy17g2343 406 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 118 392 IPR008189 GO:0008168
Ahy17g2343 406 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 195 206 IPR018063 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2343 Ahy-Chr17 113059513 113063623 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2343 K07056 - gmx:100819709 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2343 17 113059513 113063623 Ahy17g2343 17 113059513 113063623 ECH