Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2232 ATGACTCAAGATCTTGAGATGAAGGATCGTTCAACGCCTTCCAACTCTGTCTCCTCAGCTGTTCCATCTACTTTGCAGCATTTGAAGGAGATAGCATCTCTTATTGAGACCGGTTCGTACTCGAAGGAAGTTCGCAGAATTGCTCGTGCTGTTCGCCTTACAATCGCATTGAGGCGCAAATTGACAGCTTCCGTTATATCGTCTTTTCTCGATTATGTCCTCACTACCGGTTCTGAGGCTCACGCCAAATTATCTGCCTATATTCCCAAGGATGAGGATCATGAGATGGAAGTGGATGCTGCTACGTCTGCAATTCAAACGCCAGCTAAACATTTGTTGCCGGAGATAGAAATATATTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAGGTACAATGAGGCCAAAGCTTGTTCGTCTGCAAGCATTGTTTTGTTGAAGAATCTGAACAGAAGAACTGTTGATGTTATTGCATCAAGACTGTACTTCTATTATTCTTACAGTTATGAGCTTACAGGAGATCTTGCTGAAATTCGGGGAAACCTTCTGGCTTTGCACCGTATTGCTACTCTGCGCCATGATGAGCTGGGTCAGGAAACACTTCTAAATCTGTTACTTCGTAACTACCTTCACTACAATCTGTACGATCAGGCCGAGAAGCTGAGGTCCAAGGCTCCACGATTTGAAGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTAGGAAAGATTCGTACAATTCAGTTGGAGTATACTGATGCAAAAGAGTCTCTCCTCCAAGCTGCCCGAAAAGCTCCAGTTGCAGCACGTGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCCGAGCGAACTGTGTTTATGCAGAGAGGGATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACAAATGCTGTCCGGATTGGTGACTTGGAGCTGTTTAGGAATATTGCAGACAAGTTCGCTACCACCTTTAGTACCGACAGAACCCATAATTTGATAGTTCGTCTTCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCCCGCATCTCACTAGCTGATGTTGCTAAGAAATTGAGGTTGAACTCAGCAAATCCCGTTGCTGATGCTGAGAGCATTGTCTCAAAGGCTATCCGCGATGGGGCGATTGATGCTACGTTGGATCATGCAAATGGGTGGATGGTTTCTAAAGAAACTGGGGATATCTACTCGACAAATGAGCCTCAACTGGCTTTTAATTCTCGGATTGCCTTCTGTCTTAATATGCACAATGAAGCTGTTCGAGCCCTTCGATTTCCTCCAAACACGCACAAGGAAAAGGAAAGTGCTGAAAAGAGGAGAGAGAGACAACAGCAAGAACAAGAATTAGCTAAGCATATTGCGGAGGAAGATGATGATGAATTCTGA 1464 0.4413 MTQDLEMKDRSTPSNSVSSAVPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASVISSFLDYVLTTGSEAHAKLSAYIPKDEDHEMEVDAATSAIQTPAKHLLPEIEIYCYLLVLLFLIDQKRYNEAKACSSASIVLLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQRGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSTDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDEF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2232 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Ahy17g2232 487 Coils Coil 454 481 - -
Ahy17g2232 487 MobiDBLite consensus disorder prediction 452 480 - -
Ahy17g2232 487 Pfam Proteasome regulatory subunit C-terminal 420 485 IPR013586 GO:0000502|GO:0030234|GO:0042176
Ahy17g2232 487 SMART PINT_4 345 438 IPR000717 -
Ahy17g2232 487 Gene3D - 244 441 - -
Ahy17g2232 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Ahy17g2232 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Ahy17g2232 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Ahy17g2232 487 Pfam PCI domain 311 416 IPR000717 -
Ahy17g2232 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 487 - -
Ahy17g2232 487 MobiDBLite consensus disorder prediction 452 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2232 Ahy-Chr17 108121724 108125789 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2232 K03033 - gmx:100814379 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2232 17 108121724 108125789 Ahy17g2232 17 108121724 108125789 ECH
Ahy17g2232 17 108121724 108125789 Ahy8g0150 8 2752975 2756884 hybridization