Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2168 ATGGACCATCATCATCGTCTAGGGTTTCTCACCTCCTCCATACTCTCTCTCTTACAGGTTTATGTAATTTTATTTTTAGTAGCAGCAGACAATTTTTCGGCATCTGATGCTGCAGCAACTGGGGAAAAACATGCCGAGAATCATTGTGCAATGTATGACATTTGTGGAAAGCGCATTGATGGTAAAGTGGTGAACTGTCCCTATGGTTCCCCAGCTGTGAAGCCAGATGATTTGCTTTCATCGAAGATCCAAAGTTTGTGTCCAACAATTACCGGGAATGTTTGTTGTACAGAGGCTCAGTTTGACACATTAAAGACTCAAGTCCAACAGGCTATTCCTTTTCTTGTCGGTTGTCCAGCATGCTTAAGAAACTTTTTGAATCTTTTCTGTGAGTTGACATGCTCTCCAAATCAGAGTTTATTTATCAATGTGACATCAATCGACAAGGTAGGTGGTAATTTCACGGTGAGTGGGATTGACTATTACATTACTGATGCTTTTGGTGAAGGTTTATACGATTCCTGCAAGGATGTAAAATTTGGCACGACGAATTCTCGAGCTATGCAGTTCATTGGCGCTGGTGCTCAAAACTTCAAAGAATGGTTTTCTTTTCTTGGTAGAAAAGCTGCCCTTTATAGTCTTGGTTCACCATATGCAATTACATTCCAGCCAAACCCAATCAAGTCATCTGGCATGAAGCCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGATGTTCTTGTGGTGATTGTCCTTCATCATCAGTATGCTCTGATTCAGTTTCAACTACCACCCATAAGAGAGATTCCTGCACTGTGAAAGTCGGGTCTTTAGTGGTGAAATGTGTTGATTTGATTTTAGCAGTCCTATACATCATATTGATGGCTGTGTTCTTGGGTTGGGGATTTTATCATCGTATAAGGGAGAGAAAGCTGTCATATAGAACAAAACCAGAGTCTAATGTCATTAGTGGCAGTGTGGTGCACTCTCATAATAGGGAGAAGGATGAGAATCTCCCCATGCGGCAGATGATTGAAGGGGCTCCAGAAAACAGAAGTGGAGTTCAGCTCTCCACTGTGCAAGGATACATGTCAAAGTTTTACAGGAAATACGGATTGTATGTAGCTAGAAATCCAATTACAGTCTTGTTATCATCTCTGGCTATAGTTCTTCTTCTCTGTCTGGGGCTAATCCGATTCAGGGTTGAGACACGGCCTCAGAAGCTTTGGGTAGGACCTGGCAGTAAAGCAGCACAAGAGAAACAGTTTTTTGACAGCCATCTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTACCAGATAAAGTGAATACTACATCACCAAGAATTGTGTCCGAGGAAAACATTAAATTTCTCTTTGAAATACAAAAGAAAGTTGATGCAATTCGTGCTAATTATTCTGGCTTGATGGTATCTCTTCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAGAGTGTCCTGCAGTACTTCAAAATGGACCAAAAAAATTTCGATGATTATGGCGGAGTTGACCATCTCAATTACTGTTTTGAGCATTATTCCTCAGCAGACAAATGTATGAGTGCATTTAAAGGTCCTCTTGATCCAAGCACCGTCTTAGGGGGTTACTCTGGGAATGATTACTCTGAGGCATCTGCGTTTATCATAACTTATCCTGTGAATAATGCTGTTGATGGAGAAGGTAATCAAACCGCCAAGGCAATTGCATGGGAGAAGACTTTTATTCAGTTGGTGAAGGATGAGCTATTACCGATGGTGCAATCAAGGAATTTGACACTTGCTTTTTCGTCTGAAAGCTCCATCGAGGAAGAGTTAAAAAGAGAAAGTACTGCTGATGCTATTACTATAGTGGTTAGTTATCTCGTGATGTTTGCATATATATCTCTTACTCTAGGAGATACACCACATCCTTCTTCTTTCTATATTTCATCGAAGGTATTGCTTGGTCTTTCAGGAGTACTGCTTGTTATGCTTTCTGTCCTTGGATCAGTTGGATTTTTCAGTGCCCTTGGTGTTAAATCAACACTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGTGTGGATAACATGTGTATACTAGTTCACTCAGTGAAAAGGCAAAAACTTGAGCTACCTTTAGAAGAACGAATGAGCAAGGCTCTTGTGGAAGTTGGACCATCAATAACATTGGCTAGTTTATCAGAGGTTTTAGCATTTGCAGTTGGATGCATTATTTCGATGCCTGCATGCCGCGTGTTCTCCATGTTTGCAGCATTGGCTGTTCTTTTGGATTTTCTCCTCCAAGTTACAGCTTTTGTTGCTCTGATAGTTCTAGACTCCCTGCGAACAGAGGATATGAGAGTCGACTGTTTTCCATGCATAAAAGTCCATTCATCACATGCTGACCCTGATAAAAGAATCGGAAGGAGAAAGCGTGGTTTATTGGCACGTTATATGAAGGAGGTTCATGCTCCCATTCTGAGCATATGGGGAGTAAAAATTGTTGTCATTGCTATATTTGTAGCATTTGCATTTGCTAGCATTGCACTGAGTACTAGAATTGAACCTGGTCTGGAGCAGCAGATTGTTCTTCCACGAGACTCGTATCTTCAGGGATATTTCACTAATGTGTCAGAATATCTCAGAATTGGACCACCTTTGTATTTCGTTGTGAAGAATTATAACTACAGCTCAGAATCAACACAAACAAATCAGCTTTGCTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATTTCTAGGGCAGCCCTTGTGCCGGAGACTAGTTATATTGCCAAGCCAGCTGCCTCTTGGCTTGATGATTATCTTGTGTGGGTGTCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTCACAAACGGGAGTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGCTCTGCTGGTGAAGGATCTTGTGTTTCAAATGGAGCATGCAAAGATTGCACAACGTGTTTTCGTCATGCAGATTTGCGGAATGATCGTCCCTCTACAACACAATTTAAGGATAAACTTCCATGGTTTCTTAGTTCTCTGCCTTCTGCTGATTGTGCAAAAGGTGGTCATGGGGCTTACACCAGCAGTGTAGATCTGAAAGGCTATGACAGTGGTATTATCCAGGCATCATCATTCCGTACTTATCATACTCCACTCAACAAGCAGATTGACTATGTTAATTCCATGAGGGCTGCTCGAGAGTTTGCTTCAAGAGTTTCTGATTCTTTAAAGATTGAGATCTTCCCATATTCGGTGTTTTATATGTTTTTCGAGCAATACCTTAATATATGGAGGACTGCACTGGTCAATCTTGCAATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACATGCAGTTTATGGAGCTCAGCAATCATTTTGTTGGTGTTGGTGATGATTGTTGTAGATCTCATGGGTGTGATGGCCATTCTGAATATCCAGTTGAATGCTGTTTCAGTGGTCAACCTTGTTATGTCAGTGGGCATTGCGGTCGAGTTTTGTGTACATATGACTCATTCTTTTGCTGTAACTAGTGGAGACAAAGATCAACGTGTTAAGGAGGCTTTGGGTACAATGGGGGCTTCAGTTTTCAGTGGCATTACACTAACAAAGCTTGTTGGAGTTATTGTTCTTTGCTTCTCAAGGACAGAAGTTTTTGTGGTATATTACTTTCAGATGTACTTGTCATTAGTACTTCTTGGTTTCTTGCATGGACTTGTTTTCTTGCCGGTTGTATTAAGCATCTTTGGTCCTCCTTCAAGATGTATTGACCAAGGGGAGAATCATTCATCAACTTCTTCATAG 3873 0.4105 MDHHHRLGFLTSSILSLLQVYVILFLVAADNFSASDAAATGEKHAENHCAMYDICGKRIDGKVVNCPYGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFDTLKTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSIDKVGGNFTVSGIDYYITDAFGEGLYDSCKDVKFGTTNSRAMQFIGAGAQNFKEWFSFLGRKAALYSLGSPYAITFQPNPIKSSGMKPMNVSTYSCGDISLGCSCGDCPSSSVCSDSVSTTTHKRDSCTVKVGSLVVKCVDLILAVLYIILMAVFLGWGFYHRIRERKLSYRTKPESNVISGSVVHSHNREKDENLPMRQMIEGAPENRSGVQLSTVQGYMSKFYRKYGLYVARNPITVLLSSLAIVLLLCLGLIRFRVETRPQKLWVGPGSKAAQEKQFFDSHLAPFYRIEQLILATVPDKVNTTSPRIVSEENIKFLFEIQKKVDAIRANYSGLMVSLQDICMKPLDKDCATQSVLQYFKMDQKNFDDYGGVDHLNYCFEHYSSADKCMSAFKGPLDPSTVLGGYSGNDYSEASAFIITYPVNNAVDGEGNQTAKAIAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSIEEELKRESTADAITIVVSYLVMFAYISLTLGDTPHPSSFYISSKVLLGLSGVLLVMLSVLGSVGFFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHSVKRQKLELPLEERMSKALVEVGPSITLASLSEVLAFAVGCIISMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRTEDMRVDCFPCIKVHSSHADPDKRIGRRKRGLLARYMKEVHAPILSIWGVKIVVIAIFVAFAFASIALSTRIEPGLEQQIVLPRDSYLQGYFTNVSEYLRIGPPLYFVVKNYNYSSESTQTNQLCSISQCNSDSLLNEISRAALVPETSYIAKPAASWLDDYLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCSAGEGSCVSNGACKDCTTCFRHADLRNDRPSTTQFKDKLPWFLSSLPSADCAKGGHGAYTSSVDLKGYDSGIIQASSFRTYHTPLNKQIDYVNSMRAAREFASRVSDSLKIEIFPYSVFYMFFEQYLNIWRTALVNLAIAIGAVFIVCLVITCSLWSSAIILLVLVMIVVDLMGVMAILNIQLNAVSVVNLVMSVGIAVEFCVHMTHSFAVTSGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCIDQGENHSSTSS* 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2168 1290 Pfam Niemann-Pick C1 N terminus 47 276 IPR032190 -
Ahy17g2168 1290 Gene3D Multidrug efflux transporter AcrB transmembrane domain 581 797 - -
Ahy17g2168 1290 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1080 1277 - -
Ahy17g2168 1290 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 13 1289 - -
Ahy17g2168 1290 Pfam Patched family 1056 1272 IPR003392 GO:0016021
Ahy17g2168 1290 Pfam Patched family 422 909 IPR003392 GO:0016021
Ahy17g2168 1290 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1081 1273 - -
Ahy17g2168 1290 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 606 792 - -
Ahy17g2168 1290 ProSiteProfiles Sterol-sensing domain (SSD) profile. 629 792 IPR000731 -
Ahy17g2168 1290 TIGRFAM 2A060601: Niemann-Pick C type protein family 49 1273 IPR004765 GO:0005319|GO:0016021
Ahy17g2168 1290 PANTHER PATCHED FAMILY PROTEIN 13 1289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2168 Ahy-Chr17 103568457 103582721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2168 43 1290 Miscellaneous Gene Families AT1G42470 73.098 0.0 1859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2168 K12385 - gmx:100813262 2126.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2168 17 103568457 103582721 Ahy17g2168 17 103568457 103582721 ECH