Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1966 ATGAGTTCTGACAGCAGGAGCCGAAGCAGAAGCAGGAGCAGGAGCCCAATGGATCGTAAGATCCGCTCTGATCGATTTTCATATCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGCCGAGACAATTTGTGTAAGAACTGCAAGAGACCTGGTCATTATGCTAGGGAATGCCCAAATGTTGCAATTTGCCACAATTGTGGACTCCCTGGGCACATTGCTTCTGAATGCACCACAAAATCGTTGTGCTGGAATTGTAAAGAACCTGGGCACGTGGCTAGCAACTGTCCAAATGAAGGCATCTGTCATACCTGTGGTAAAGTTGGACATCGCGCAAGGGAGTGCACAGCACCTCCAATGCCACCAGGGGACTTGAGGTTGTGCAACAACTGTTATAAACAGGGTCATATTGCAGCTGAATGCACCAATGAGAAAGCATGCAACAACTGTAGGAAGACAGGACACCTGGCACGTGATTGTCCAAATGATCCCATTTGTAACTTGTGCAATGTTTCTGGGCATGTAGCTAGACAGTGTCCAAAAGCTAACATGCTTGGAGATCGTGGCACCAGTGGCGGTATGCGTGGGGGTGGTGGTGGTTACCGAGATGTTGTATGCCGGAATTGCCAGCAATTGGGTCACATGAGTCGGGACTGCATGGGACCTCTGATGATTTGTCACAATTGTGGAGGTCGTGGTCACCTGGCATATGAGTGCCCTTCAGGTCGATTTGTGGATCGTTATCCCAGGCGGTACTGA 765 0.4967 MSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHVASNCPNEGICHTCGKVGHRARECTAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKANMLGDRGTSGGMRGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPRRY* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 208 221 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Gene3D - 147 195 - -
Ahy17g1966 254 Gene3D - 102 146 - -
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 104 117 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 228 243 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 66 79 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 PANTHER OS10G0545300 PROTEIN 1 254 - -
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Pfam Zinc knuckle 66 80 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Pfam Zinc knuckle 103 118 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Pfam Zinc knuckle 46 62 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Pfam Zinc knuckle 227 243 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Pfam Zinc knuckle 207 221 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 Gene3D - 7 81 - -
Ahy17g1966 254 Gene3D - 82 101 - -
Ahy17g1966 254 PANTHER - 1 254 - -
Ahy17g1966 254 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
Ahy17g1966 254 SUPERFAMILY Retrovirus zinc finger-like domains 124 165 IPR036875 GO:0003676|GO:0008270
Ahy17g1966 254 Gene3D - 203 245 - -
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SUPERFAMILY Retrovirus zinc finger-like domains 198 244 IPR036875 GO:0003676|GO:0008270
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 MobiDBLite consensus disorder prediction 1 29 - -
Ahy17g1966 254 ProSiteProfiles Zinc finger CCHC-type profile. 85 100 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SUPERFAMILY Retrovirus zinc finger-like domains 37 82 IPR036875 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 207 223 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 65 81 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 227 243 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 46 62 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Ahy17g1966 254 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1966 Ahy-Chr17 69709809 69713680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1966 K09250 - gmx:100803820 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1966 17 69709809 69713680 Ahy17g1966 17 69709809 69713680 ECH