Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1685 ATGGATTTGGTGGCGTCCCACAAACAGTTTTGCTCATTTGGGCATTTGCTTAAGGATGGCACAAGAGATTGTAGCACCAGAAGTAGGACTTTGGATAACACTAGTTCTGTATTCAATTTAGGAGTAAGTAATATCTCTGTTAAATCTCATTCACTATGTTCCTCTGATGATAGCAGTGTTACTGCGTTTGGAAAATCTAAGAGCAGTTGGTCTAGAAGGTATCGGTGTGTTTCTGCTGTTTTGAAATATGAAACTTTTGGTTTGAATGGTAGTTCACAACATTCTATAAAGTTTCCGAAAGGGGATTCAAATGAGGAGGAATCCTTGCCAAATGGTGTTAGTGCTTCCCTGAATTTTGAGGAATTTGAGAATAATCATCTGCAAATGTTGGTTAGAAATGGGGAAATGGAGGAAGGGTTAAAGCTTTTAGAGCATATGATTAAACATGGCAATATCCCTGATGTCAATGCGTGCAGTGCTCTGGTCTGCCAATTTTGCAAGGTTGGCAGGACCAAGAAGGCAAGGAGAATCATGAAAATTTTGGAGGAGTTTGGTGGTGTTATTGATTTAACCAGTTACAATATTTTGATTGATACTTATTGCAAATCAGGGGCGATAGAGGAGGCCTTGTGGGTTTTGGATCGCATGAGTGTTGCTCCTAATGCCATTACTTTCGATACAATTTTTCGTAGTTTGTGTGGTAGAGGGAAACTGAAGCAAGCCATGGAAGTTCTTAACAGGCAGCTGCAAAGCGAGTGTCATCCAGATGTGATTTCATACACTGTATTGATTGATGCAACTTGTAGAGAATCTGGAGTTGATCAGGCAATGAAGTTGATTGATGAGATGAGAAGCAAAGGATGCAAACCCGATGTGGTCACATATAATGTTATTATCAATGGTATTTGCAAAGAAGGTAGGTTGGATGAAGCAATCAGATTGTTAAGTAACTTGCCCTCCTATGGTTGTCAGCCTGATGTAATCTCGCATAATATTATTTTGCGTGGCTTGTGTAGCATGGGAAGATGGATGGATGCTAAGGGGCTAGTTGCTGGCATGATTTGTAAGGGTTGTTCCCCTAGTGTTGTTACTTTCAATATCTTGATTAGTTTCCTCTGCCAAAAAGGCTTGTTGGGCCAAGCCATTGATATATTGAAGATGATGCCTAAGCATGGTTGTTTGCCTAATCCCAGGAGTTACAATCCATTGCTTCAAGGGTTTTGTTATGTAAATAAGATTGATAGAGCAATTGAATACTTGGAAATAATGGTAAATAAGGGTTGTCACCCAAATATAGTGACCTATAATATCTTGCTGTTAGCATTATGCAAAGATGGGAGGGTGGATGATGCAGCTGAAATAATGAACCAACTCAGTTGCAAAGGGTGTTCTCCCAGTCGAGTCACTTATAATATAGTAATTTATGGGCTTTTAAATGTGGGAAAAACAGAGAATGCAATGGAACTCTTCAAAGAGATGTGCCGAAAAGGTCTTAAACCTGATAAAGTTTCTTACAATACGCTCATTGATGGGCTTTTAAAGGCAGGAAAGACAGATCTTGCTATGGAACTCTTCGAGAAGATGCGCACAAGAGGTCCTAAACCTGATACAATTACTTACACTTCACTAGTTAGGGGTCTTAGCCGCAAAGGAAAGGTTCGTGAAGCAATCAAGTTTCTACATGACTTGGAAGCATTGGGTTTCAGGCCTAATGTGTTCTTTTATAACTCAGTCATGAAGGGGCTCTGTAAAGCTCAGCAAACCAGTGCTGCCATCGATTTTCTGGCTCGTATGACAGCCAAGGGATGTAAACCAAGTGAGGATACATATAAGATTCTTGTGGAAGGAATTGCTTGTGAGGGATTAGTTAAGGAGGCTTTGGGATTATTAAATGTGTTGTGCTATGGAAGATTTGTGAGGAAAAGTTTGGCTGAAAAGGTAGCAATGAATATATATAGAATACATCAACAACTAGAGCAACCACTAAGTGTTATCTCTCAAACCTATAATTTAGTTAATGTAGCACCTTCAAACAAATCAACTCATACCTCCAGTTGCTTGTCTTGA 2067 0.3957 MDLVASHKQFCSFGHLLKDGTRDCSTRSRTLDNTSSVFNLGVSNISVKSHSLCSSDDSSVTAFGKSKSSWSRRYRCVSAVLKYETFGLNGSSQHSIKFPKGDSNEEESLPNGVSASLNFEEFENNHLQMLVRNGEMEEGLKLLEHMIKHGNIPDVNACSALVCQFCKVGRTKKARRIMKILEEFGGVIDLTSYNILIDTYCKSGAIEEALWVLDRMSVAPNAITFDTIFRSLCGRGKLKQAMEVLNRQLQSECHPDVISYTVLIDATCRESGVDQAMKLIDEMRSKGCKPDVVTYNVIINGICKEGRLDEAIRLLSNLPSYGCQPDVISHNIILRGLCSMGRWMDAKGLVAGMICKGCSPSVVTFNILISFLCQKGLLGQAIDILKMMPKHGCLPNPRSYNPLLQGFCYVNKIDRAIEYLEIMVNKGCHPNIVTYNILLLALCKDGRVDDAAEIMNQLSCKGCSPSRVTYNIVIYGLLNVGKTENAMELFKEMCRKGLKPDKVSYNTLIDGLLKAGKTDLAMELFEKMRTRGPKPDTITYTSLVRGLSRKGKVREAIKFLHDLEALGFRPNVFFYNSVMKGLCKAQQTSAAIDFLARMTAKGCKPSEDTYKILVEGIACEGLVKEALGLLNVLCYGRFVRKSLAEKVAMNIYRIHQQLEQPLSVISQTYNLVNVAPSNKSTHTSSCLS* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Ahy17g1685 688 PANTHER ATPASE EXPRESSION PROTEIN 3 55 503 - -
Ahy17g1685 688 PANTHER ATPASE EXPRESSION PROTEIN 3 503 650 - -
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 129 155 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 363 396 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 575 607 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 468 501 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 192 217 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 503 537 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 328 362 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 538 572 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 223 257 IPR002885 -
Ahy17g1685 688 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Ahy17g1685 688 PANTHER OS02G0565400 PROTEIN 55 503 - -
Ahy17g1685 688 PANTHER OS02G0565400 PROTEIN 503 650 - -
Ahy17g1685 688 Pfam PPR repeat 531 562 IPR002885 -
Ahy17g1685 688 Pfam PPR repeat 426 457 IPR002885 -
Ahy17g1685 688 Pfam PPR repeat 322 353 IPR002885 -
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 219 IPR002885 -
Ahy17g1685 688 Pfam PPR repeat 128 150 IPR002885 -
Ahy17g1685 688 Gene3D Tetratricopeptide repeat domain 320 388 IPR011990 GO:0005515
Ahy17g1685 688 Gene3D Tetratricopeptide repeat domain 389 455 IPR011990 GO:0005515
Ahy17g1685 688 Gene3D Tetratricopeptide repeat domain 564 634 IPR011990 GO:0005515
Ahy17g1685 688 Gene3D Tetratricopeptide repeat domain 249 319 IPR011990 GO:0005515
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Ahy17g1685 688 SUPERFAMILY HCP-like 410 602 - -
Ahy17g1685 688 Gene3D Tetratricopeptide repeat domain 456 563 IPR011990 GO:0005515
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Ahy17g1685 688 Pfam PPR repeat family 465 514 IPR002885 -
Ahy17g1685 688 Pfam PPR repeat family 190 233 IPR002885 -
Ahy17g1685 688 Pfam PPR repeat family 255 304 IPR002885 -
Ahy17g1685 688 Pfam PPR repeat family 360 408 IPR002885 -
Ahy17g1685 688 Pfam PPR repeat family 570 617 IPR002885 -
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Ahy17g1685 688 Gene3D Tetratricopeptide repeat domain 112 248 IPR011990 GO:0005515
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Ahy17g1685 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1685 Ahy-Chr17 38269324 38273598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g1685 256 634 Glycosyltransferase AT1G05670 29.551 8.99e-57 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1685 - - adu:107459331 1352.81