Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g1683 ATGGCCATGGCTCTTCGTAGACTCTCCTCCACTCTTAACAAACAAACATATTCCCTTTATCGCATGTCTTCTTCTCTGTCGCCGCAAGAGAGAGACAAAGCTCGCGCTGCCTGGGTGAAGCAGCTCAACGAGCCTCTCGAAGTCATTGATCCTGAGATCGCCGAAATAATCGAACTCGAAAAAGCTCGTCAATGGAAGGGGCTGGAACTCATACCTTCGGAGAACTTCACGTCACTGTCAGTGATGCAAGCTGTTGGATCCGTGATGACAAACAAATACAGCGAAGGGTATCCGGGAGCTAGATACTACGGAGGAAATGAGTACATTGACATGGCCGAGACCTTGTGTCAGAAACGTGCACTTGAAGCTTTCAATTTGGATCCAGCAAAATGGGGAGTTAATGTGCAGTCATTATCTGGCTCCCCTTCCAACTTCCAAGTTTACACTGCTTTATTGAAGCCTCATGAGAGAATTATGGCACTTGATCTTCCACATGGTGGGCATTTGTCACATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACGATGCCATACAGATTGGATGAAAGCACTGGTTATATTGATTATGACCAGTTGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCCAGTGCTTATTCCCGCCTTTATGATTATGCAAGAATTCGCAAGGTCTGTGATAAGCAGAAGGCAATTATGTTGGCTGATATGGCACACATCAGTGGATTGGTTTCTGCAGGTGTTATTCCTTCTTGTTTTGATTATGCAGATGTTGTGACAACCACAACACATAAGTCACTCCGTGGACCACGTGGGGCAATGATCTTCTTCAGGAAGGGTCTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTCTATGACTATGAAGATAAAATAAATCAGGCTGTTTTTCCCGGACTTCAAGGTGGTCCACACAACCACACGATTTCAGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACAAGAATTCAAGGATTACCAAAAGCAAGTTGTCAGTAATTGTGCGGTATTCTCACAGAGTTTGCTAGAGAAAGGCTACGATATTGTATCTGGTGGAACTGATAACCATCTATTGTTAGTTAACTTAAGAAACAAGGGCATCGATGGCTCAAGGGTAGAGAAGGTGTTAGAAGCAGTTCATATAGCAGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCCGGAGGCATCCGAATGGGGACCCCTGCTCTCACATCAAGAGGGTTTGTTGAGGAGGATTTTAAGAAAGTAGCTGAATTTTTTGATTTAGGAGTCAAGTTAGCCTTACAGATTAAGGCAAATACCAAAGGTACGAAGTTGAAAGATTTTGCTGCAGAAATGCAATCAGATGCATGCCAATCTGATATTGCAAAGCTCCGTCATGAAGTTGAGGAATATGCAAAGCAGTTCCCCACAATTGGCTTTGAGGTGGAGAAAATGAAGTACGGTAATTGA 1524 0.4357 MAMALRRLSSTLNKQTYSLYRMSSSLSPQERDKARAAWVKQLNEPLEVIDPEIAEIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFNLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAALFRPKLIVAGASAYSRLYDYARIRKVCDKQKAIMLADMAHISGLVSAGVIPSCFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKEVFYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQAMTQEFKDYQKQVVSNCAVFSQSLLEKGYDIVSGGTDNHLLLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEFFDLGVKLALQIKANTKGTKLKDFAAEMQSDACQSDIAKLRHEVEEYAKQFPTIGFEVEKMKYGN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g1683 507 Gene3D Aspartate Aminotransferase, domain 1 50 494 IPR015422 GO:0003824
Ahy17g1683 507 SUPERFAMILY PLP-dependent transferases 37 498 IPR015424 -
Ahy17g1683 507 CDD SHMT 50 489 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ahy17g1683 507 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 269 285 IPR019798 GO:0030170
Ahy17g1683 507 Coils Coil 472 492 - -
Ahy17g1683 507 Hamap Serine hydroxymethyltransferase [glyA]. 45 497 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ahy17g1683 507 Gene3D - 75 348 IPR015421 GO:0003824
Ahy17g1683 507 Pfam Serine hydroxymethyltransferase 47 443 IPR039429 -
Ahy17g1683 507 PIRSF SHMT 27 502 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ahy17g1683 507 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 22 506 - -
Ahy17g1683 507 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 22 506 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g1683 Ahy-Chr17 38200323 38206595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g1683 K00600 - gmx:100816213 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1683 17 38200323 38206595 Ahy17g1683 17 38200323 38206595 ECH
Ahy17g1683 17 38200323 38206595 Ahy7g1765 7 65537807 65544010 hybridization