Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0484 ATGGATTTGTCGGATGCCGTAATTGTCAAATCCAGTAGGTTGAAGTCTGTTGTATGGAATGATTTTGATAGAATTAAGAAAGGAGACACCTGTGTGGCAGTTTGTAGGCATTGTAAAAGGAAATTGAGTGGATCAAGTTCGAGTGGAACATCGCATTTGAGGAACCATTTAGTCAGGTGTCAGAGAAGGTCTAGCCATGGCATAGCTCAATATGTTACAGCTAAAGAAAAGAGAAAGGACACAACTGTCACTGTTGCAAACTTCAACTTTGATAATAAAGATCACAAAAAAGATGACCCCCTTAGCTTCGTCAATGTTAAATTGGACCAGGAGCAGTTGAAAGATGAAAATGTGAATGCTGGAAACTGTAACTTCGATCAAAGGCGGAGTCGATTTGATCTTGCTCGAATGATTATTCTACATGGATATCCGTTGGCTATGGTTGAACATGTGGGTTTCAGAGTATTTGTAAAAAATCTACAGCCTTTGTTTGAGCTTGTGACGATGAATAGGGTTGAGGCAGACTGTATTGAGATTTATGACAAAGAGAAACAGAAGGTGAATGAGATGTTGGATAAATTACCTGGGAAAATCAGCCTTGGTGCCGATGTGTGGACTACATTGAATGGTTCTGAATATTTATGCTTGACTGCAAATTATATAGATGAATCATGGTTGTTAAGGAGGAGGATTTTAAATTTTGTCACAATTGATCCTTCCCATACTGAAGACATGCTTTCGGATACTATCATGACTTGTCTGATGGATTGGGATATTGACCGGAAGCTGTTCTCCGTTATCTTGGATAGTACTACCGGCAATGACGTTGCAATAAGAATTGGGGAAAGACTTTCGCAAAACAGGTTTCTTTATTGTAATGGTCAATTATTTGATATACGCTGTGCTGCGAGTGTTCTACATGTCATGGTTCAGCATGCTCTGGTAGCTATTAGTGAATTAATCAGCAAGGTCAGAGAAAGTATTCGTTATGTTAGAAGTTCACAGACAGTACAAGCAAAGTTCGACGGGATGGCCAAAGAAGTCGGGATTAGGAGTCAAAAATGCCTAACTGTAGATAATCCATTCCAATGGAATACCACACATTCAATGCTTGAAGCTGTCTTAGAATTCAAGGATGTTTTTATTCTTTTGCAAGAAAATGATGATGGCTGCACAGTCAGCTTATCTGATGTAGAGTGGGACAGAGTCTCTGCCATTACTAATTACTTGAAACTTTTTGTGGAAGTTACAAATGTTTTCACCAGGAGCAAGTATCCAACTGCAAACATATATTTCCCTGAACTATGTGATGTCAAGTTGCATCTGATTGAATGGTGCAACAATTCTGATGAATATATTAGTTCTTTGGCATTAAGAATGCGGAGCAAGTTTGATGAATACTGGGAGAAATGTAGCTTAGGTTTGGCAGTTGCAGCCATGTTAGATCCGAGATTCAAGATGAAATTGGTAGAATATTACTATCCACAAATCTATGGTAGCACTTCTTCAGCTCGCATCAACGAGGTTCTTGACAGCGTGAAGGCTCTATACAATGAACATTCAATATGCTCGCCACTAGCTTTTCATGATGAGGGTCTGCCGTGGCAAGTTGGCAGTGTTCGACTTTCCTTACCGACTTCTGCAAAGGACTCTAGGGATAGACTCATGGGATTTGATAAATTTCTCAATGAAACTTCCCAGGGCGAAGGCATGAAATCCGATCTAGACAAGTACCTAGAAGAGCCTCTCTTTCCACGCAATGTTGATTTCAGCATATTGAATTGGTGGAAAGTTCACACTCCCAGGTATCCTGTATTATCCATGATGGCAAGAAACATGCTAGGAATTCCGATGTCAAAAGTTCCGCCGGAGTTGGCCTTCAACACCGATGGAAGGGTTCTTGATCGCGATTGGAGTTCGCTTAATCCTGCTACTATCCAAGCATTGGTTTGTTCACAAGATTGGATAAGGAATGAATTAGAAAATTAA 1989 0.4002 MDLSDAVIVKSSRLKSVVWNDFDRIKKGDTCVAVCRHCKRKLSGSSSSGTSHLRNHLVRCQRRSSHGIAQYVTAKEKRKDTTVTVANFNFDNKDHKKDDPLSFVNVKLDQEQLKDENVNAGNCNFDQRRSRFDLARMIILHGYPLAMVEHVGFRVFVKNLQPLFELVTMNRVEADCIEIYDKEKQKVNEMLDKLPGKISLGADVWTTLNGSEYLCLTANYIDESWLLRRRILNFVTIDPSHTEDMLSDTIMTCLMDWDIDRKLFSVILDSTTGNDVAIRIGERLSQNRFLYCNGQLFDIRCAASVLHVMVQHALVAISELISKVRESIRYVRSSQTVQAKFDGMAKEVGIRSQKCLTVDNPFQWNTTHSMLEAVLEFKDVFILLQENDDGCTVSLSDVEWDRVSAITNYLKLFVEVTNVFTRSKYPTANIYFPELCDVKLHLIEWCNNSDEYISSLALRMRSKFDEYWEKCSLGLAVAAMLDPRFKMKLVEYYYPQIYGSTSSARINEVLDSVKALYNEHSICSPLAFHDEGLPWQVGSVRLSLPTSAKDSRDRLMGFDKFLNETSQGEGMKSDLDKYLEEPLFPRNVDFSILNWWKVHTPRYPVLSMMARNMLGIPMSKVPPELAFNTDGRVLDRDWSSLNPATIQALVCSQDWIRNELEN* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0484 662 Pfam BED zinc finger 16 60 IPR003656 GO:0003677
Ahy17g0484 662 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 2 659 - -
Ahy17g0484 662 Pfam hAT family C-terminal dimerisation region 574 656 IPR008906 GO:0046983
Ahy17g0484 662 SUPERFAMILY beta-beta-alpha zinc fingers 16 62 IPR036236 -
Ahy17g0484 662 SUPERFAMILY Ribonuclease H-like 184 658 IPR012337 -
Ahy17g0484 662 Pfam Domain of unknown function (DUF4413) 422 520 IPR025525 GO:0003677
Ahy17g0484 662 ProSiteProfiles Zinc finger BED-type profile. 13 66 IPR003656 GO:0003677
Ahy17g0484 662 PANTHER BED FINGER-RELATED 2 659 IPR045259 -
Ahy17g0484 662 SMART bed5 13 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0484 Ahy-Chr17 4658245 4661244 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0484 - - gmx:106799808 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0484 17 4658245 4661244 Ahy17g0484 17 4658245 4661244 ECH
Ahy17g0484 17 4658245 4661244 Ahy7g0339 7 2751162 2754209 hybridization