Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0386 ATGGACGACAACGACGTGGAGGACGTTGAAGCCGTTCCTCAGGTTTACATGGCTTGCATCTTACACGGTCACAGAATAGGAGTTTCTTACTATGATTCCAGTGTTCGCCAACTTTATGTGCTTGAAGTATGGGATGATGGTGACAAGCTTTATCCAGTAATTGATATGGTGAAATATCAAGCAAACCCTGTAATAATTTATACAAGCTCTAAATGTGAGGAATCCTTCTTATCTGCTCTGCAACGAAGTGATGAAGCAGCCGAGGCTCCTCAAGTAAAGCTTGTTAAAAGCTCAATATTCAGTTATGAGCAAGCATGGCATAGATTAATTTACCTGCGAGTGGTGGGAATGGATGAAGGATTAAATGAAAAGGAGAGGGTTTATTATTTGAGTTCTATGATGGACATGGGAAGTGAAGTACAAGTTCGTGCTAGCGGTGGTCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAATGGAATCTGGAAACACATCAATTACAGTAGATTCTGTAGCAGAAATTTCATTACATAAGTTTCTCAAACTTGATGTAGCAGCACATGAAGCCTTACAAATATTCCAAATGGACAAGCACCCTAGCCACATGGGCATTGGTAGACCAAAAGAAGGGTTTTCAGTATTTGGAATGATGAATAAGTGTGTGACTCCAATGGGTAGACGTCTTTTGAGAAACTGGTTCATGAGGCCTATACTTGATCTTGAAGTTCTGAACTACCGTTTAAATTCTGTATCTTTCTTTCTATGCTCAGAAGAATTGGTCGTTTCTTTACGTGACACCCTGAAATCTGTGAAGGATATTCCCTACTTGCTAAAGAAATTTGACTCTCCGAGCTCCATATGCACCAGCTCTGATTGGACAGCTCTTCTCAAGAGTATTTGTGCGCTGTTGCATTTGGGAAAGATATTTGAAGTTGGGATTTCAGAAGGTCTTCGAGAAGAACTTAAATACTTGAATCTGGATATTGTTGAAAAGGCAAGTTCATCCATATCAACGGAACTTGCTTATGTCTATGAGCTGGTAATTGGTGTTATTGACGTAAACAGAACTAAAGAGAAGGGATATGCAACAATAGTGAAAGAAGGTTTCTGTGATGAGTTGGATGAGTTGAGGCAAATATATGAGGAACTGCCAGAATTTCTCCAACAGGTTTCATCATTAGAATTGGCACAATTTCCTGTTATATTCAAGGACAAGCCTATTCCTTGTATAGTTTACATACAGCAGATAGGATATTTGATGTGTATCTTTGAAGAAAAACTTGAAGAAACCACTCTGGAGAAGCTTGTGGATTGGGAATACACATTTTGTGACGCAGATGCAGAGACAAAAAGATACTTTTATCGTACACCAAAAACAAGAGAACTGGACAATCTTCTAGGAGATATCTATCATAAAATTTTAGATATGGAGAGGGCGATCACAAGAGACTTGTTTTCACATATAGTTCTGTTCTCAAGCCACTTGACAAAGGTGGCAACATTTGCAGCTGAACTGGACTGCTTTCTGTCTATGGCATTGGTTGCTCGGCAGAACAACTATATCAGGCCTTTGTTGACTGAAGAGAACTTACTCGATATAAAAAATGGAAGGCATGTTCTGCAGGAAATGACTGTCGATACTTTTATTCCTAATGACACCAAGATTCTTCGTGATGGAAGAATTAATATCATCACCGGTCCTAATTTTTCTGGAAAGAGTATCTATATAAAGCAGGTGGCTTTAATTGTTTTTCTATCCCACATTGGTAGTTTCGTGCCAGCAGATGCAGCAACAGTGGGTCTGACTGATAGAATATTTTGTGCAACGGGAAGCAGGCTGATGACAGCAGAACAATCAACATTCATGATTGATCTTCATCAAATAGGAATGATGCTAAGGCACGCTACTTCACGATCTCTATGTCTGGTAGATGAATTTGGAAAAGGGACTCTCACAGAAGATGGCATTGGTCTGCTAGCTGGGACCATAAATCACTTTGTAACGTATGATGAACCACCAAAGGTCTTCATATGCACTCATCTCATGGATTTATTGCAAGGGCATTCTTTGACCAAGTCTCAGCAGATTAGCTTTCATACAATGAGTATACTGAGGCCTGACGATAATTCTACATTTCTTGAAGACATTGTATTTTTGTATAGGCTTGTTCCAGGACATGCGCATCATAGCTACGGACTGCACTGTGCACTGCTTGCAGGTGTGCCACATGAAATTATAAAAAGAGCTGCACTTGTGTTGGATGCTGTAGCAAATAACAAGTGTGTTGAGCGTCTATGTAATGATAACATCACGGCACGAGATCATCAGTACAAGAATGCCATAGAGAAGTTGTTGGAATTCGATATTGACAAAGGCAATTTAAACCAATTTTTTGATGATGTATTTTCTCTATCTCTTAATTCATGA 2442 0.3927 MDDNDVEDVEAVPQVYMACILHGHRIGVSYYDSSVRQLYVLEVWDDGDKLYPVIDMVKYQANPVIIYTSSKCEESFLSALQRSDEAAEAPQVKLVKSSIFSYEQAWHRLIYLRVVGMDEGLNEKERVYYLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQMESGNTSITVDSVAEISLHKFLKLDVAAHEALQIFQMDKHPSHMGIGRPKEGFSVFGMMNKCVTPMGRRLLRNWFMRPILDLEVLNYRLNSVSFFLCSEELVVSLRDTLKSVKDIPYLLKKFDSPSSICTSSDWTALLKSICALLHLGKIFEVGISEGLREELKYLNLDIVEKASSSISTELAYVYELVIGVIDVNRTKEKGYATIVKEGFCDELDELRQIYEELPEFLQQVSSLELAQFPVIFKDKPIPCIVYIQQIGYLMCIFEEKLEETTLEKLVDWEYTFCDADAETKRYFYRTPKTRELDNLLGDIYHKILDMERAITRDLFSHIVLFSSHLTKVATFAAELDCFLSMALVARQNNYIRPLLTEENLLDIKNGRHVLQEMTVDTFIPNDTKILRDGRINIITGPNFSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGTINHFVTYDEPPKVFICTHLMDLLQGHSLTKSQQISFHTMSILRPDDNSTFLEDIVFLYRLVPGHAHHSYGLHCALLAGVPHEIIKRAALVLDAVANNKCVERLCNDNITARDHQYKNAIEKLLEFDIDKGNLNQFFDDVFSLSLNS* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0386 813 PIRSF Msh6 4 802 IPR017261 GO:0006298|GO:0030983
Ahy17g0386 813 SMART mutATP5 564 759 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ahy17g0386 813 SUPERFAMILY DNA repair protein MutS, domain III 188 524 IPR036187 -
Ahy17g0386 813 Pfam MutS domain V 568 759 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ahy17g0386 813 Gene3D - 525 795 IPR027417 -
Ahy17g0386 813 CDD ABC_MSH5_euk 537 746 - -
Ahy17g0386 813 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 793 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Ahy17g0386 813 SMART DNAend 213 549 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ahy17g0386 813 PANTHER MUTS PROTEIN HOMOLOG 5 24 793 - -
Ahy17g0386 813 Pfam MutS family domain IV 373 474 IPR007861 GO:0005524|GO:0006298|GO:0030983
Ahy17g0386 813 ProSitePatterns DNA mismatch repair proteins mutS family signature. 644 660 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ahy17g0386 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 760 IPR027417 -
Ahy17g0386 813 Pfam MutS domain III 192 517 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ahy17g0386 813 Gene3D - 185 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0386 Ahy-Chr17 3739464 3748229 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0386 K08741 - gmx:100794332 1426.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0386 17 3739464 3748229 Ahy17g0386 17 3739464 3748229 ECH
Ahy17g0386 17 3739464 3748229 Ahy7g0257 7 2009827 2018614 hybridization