Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0017 ATGGAGAAGATAGTGAGTGAGTATGATGGTGGTGCCTCGCTACCTTCACAATCATGCAGAGACGCGAACGAAAGAAAGGTGACGTACTTCTACGAACCCACCATTGGAGACTACTTCTACGGTCATGGTCATCCAATGAAGCCTCACCGGATCCGCATGGCTCACAGCCTCATCGTCCATTACGGCCTCCACCGCCTTTTGTACATCAACCGTCCCTTACCGGCTTCCGCCTCCGACGTCCGCCGCTTCCACTCCGATGACTACGTTCAATTCCTTTCCACTGTCTCGCCGGACCTCGCTGTCGCCGCCCATGCCAACCACTCCAATTACCGCACGCTCCGGCGATACAACGTTGGCGACGATTGCCCCGTTTTTGACGGCCTCTTTAACTTCTGCTGTGTCTCCGCCGGCGCCTCCATCGGCGCCGCCGTCGCACTCAACCTTGGTGATGCTGATATTGCTGTTAATTGGGCTGGTGGCCTCCACCATGCCAAGAAAGCTGAGGCTTCGGGATTCTGTTATGTTAACGACATCGTTCTTGGGATTCTTGAGCTCCTCAAGATTCACAAGCGTGTGCTGTATGTTGACATTGATGTTCACCACGGTGATGGCGTTGAGGAGGCCTTTTACACTACTGATAGAGTGATGACAGTGTCTTTCCATAAGTATGGGGATTTTTTCCCAGGCAGTGGGCACATTAAAGACATTGGGGTGGGCGAAGGAAAGAATTATTCTCTGAATGTTCCACTAAATGATGGAATGGATGATGAAAGTTTCCGTGGCCTGTTTCGTCCCATCATTCAAAAAGTCATGGAGGTTTATCAACCTGATGCAGTTGTTCTTCAATGTGGAGCTGATTCGCTGTCAGGTGACAGGTTGGGTTGCTTCAACTTGTCTGTGAAGGGTCATGCAGATTGTGTTCGTTTCCTTAGATCATTCAATGTTCCTCTGATGCTTTTAGGTGGGGGAGGATATACGATTCGTAATGTTGCTCGCTGTTGGTGTTACGAGACAGCGGTAGCAGTGGGAGTTGAGCTTGATAATAAATTGCCTTTCAATGAATACTATGAGTATTTTGGCCCTCAATATGTTCTTCATTACAAGCCTTCGAGACAGGATAACCTAAACAAGCCCAGAGATCTCGAAAAGATTAGGATCAAGTTACTAGAACGGCTCTCCAGACTTAGCCATGCACCCAGTGCTCCTTTTCAGACAACTCCGTCGGTTACAAATGTTCCAGAAGAGGAAGAAGAGGATATGGATGTAAGACCAAATTGTCGCCTATGGAACGGTCAAGATTTTGATTCGGATAATGATGAAGATGTGGAGAATACAAAATCTTCAAACTCAGCTGGCTGA 1359 0.4827 MEKIVSEYDGGASLPSQSCRDANERKVTYFYEPTIGDYFYGHGHPMKPHRIRMAHSLIVHYGLHRLLYINRPLPASASDVRRFHSDDYVQFLSTVSPDLAVAAHANHSNYRTLRRYNVGDDCPVFDGLFNFCCVSAGASIGAAVALNLGDADIAVNWAGGLHHAKKAEASGFCYVNDIVLGILELLKIHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGSGHIKDIGVGEGKNYSLNVPLNDGMDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCVRFLRSFNVPLMLLGGGGYTIRNVARCWCYETAVAVGVELDNKLPFNEYYEYFGPQYVLHYKPSRQDNLNKPRDLEKIRIKLLERLSRLSHAPSAPFQTTPSVTNVPEEEEEDMDVRPNCRLWNGQDFDSDNDEDVENTKSSNSAG* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0017 452 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Ahy17g0017 452 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Ahy17g0017 452 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Ahy17g0017 452 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Ahy17g0017 452 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Ahy17g0017 452 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Ahy17g0017 452 PANTHER HISTONE DEACETYLASE 10 446 - -
Ahy17g0017 452 Gene3D Histone deacetylase domain 14 407 IPR037138 -
Ahy17g0017 452 SUPERFAMILY Arginase/deacetylase 25 394 IPR023696 -
Ahy17g0017 452 CDD HDAC_classI 30 341 - -
Ahy17g0017 452 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Ahy17g0017 452 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Ahy17g0017 452 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Ahy17g0017 452 PIRSF HDAC_I_euk 11 451 IPR003084 GO:0004407|GO:0016575
Ahy17g0017 452 PANTHER HISTONE DEACETYLASE 6 10 446 - -
Ahy17g0017 452 Pfam Histone deacetylase domain 44 339 IPR023801 -
Ahy17g0017 452 MobiDBLite consensus disorder prediction 399 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0017 Ahy-Chr17 236763 240280 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0017 K06067 - gmx:100801159 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1647 11 89702471 89706829 Ahy17g0017 17 236763 240280 PCT
Ahy1g1564 1 70228011 70232224 Ahy17g0017 17 236763 240280 PCT
Ahy17g0017 17 236763 240280 Ahy11g1647 11 89702471 89706829 PCT
Ahy17g0017 17 236763 240280 Ahy1g1564 1 70228011 70232224 PCT