Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g0015 ATGTTGATTCGGTTCCATTGGCTTCAATCTGAACTCAGCAACTGCATATGCAAGTCACTTTTGAGGGCTAAGCAGTTACATGCTTTGCTTTTAAGGACCCATCTCTTAGAGGATCCCTTTTATGCAACTAAACTTGTTAGGCTCTATGCTGCCAACAATGACATTCACTCTGCATACCAAGTGTTTGATGAAAGTTCTACAAGAAGTGTCTACCTTTGGAACTCCATCATTCGTGCTTATGCTCAGTCCAGTAGATTTGACAGTGCAATCTCCTTGTTTAGAACCATGTTTGGAGCTGATATAAGCCCTGACAATTACACTTATGCTTGCGTTATTCGCGCGTGCTGCGACAACTTTGATTTTGGCATGCTGAGACTAGTTCATGGAGCTGCTGTGGCTTCTGGGTTTGGAATGGACCCTATTTGCTGCAGTGCTCTTGTGGCAGCATACTCAAAGCTTGGTTTTGTTAATGATGCACATAGAGTGTTCAATGGCATCGCTGCACCCGATTTGGTTTTGTGGAATTCACTGATTTCTGGTTATGTGTGCTCTGGCTCTTGGGAGATAGGGATGCAAATGTTTAACTCGATGCGACATGTTGGGGGGAAGCCAGATGGATTTACACTTGCTGGATTGCTTGGTGGGATCACAGATTCTAGCTTGATGAGTATTGGCCAAGGATTACATGGTTTAAGCTTAAAGAGTGGGCTAGATTCTGATTCCCATGTAGGTAGTTTACTGGTGAGTATGTACTCAAGATGCAAGTGCATGGCATCAGCATATAGCGTCTTTTTCAGTATTTTCCAGCCTGATTTGGTCACCTGGTCTGCTCTTATTGCTGGCTATTCGATGTCCGGGGAGTATGAGAAGGCCTTGTTCTATTTCAGGAAATTAAACAAGGGAAACAAGAAGCCTGACTCTGTTTTGATTGCTAGTGCATTGGCTGCTATAGCTCAGGCAGCGAATATAGGACCCGGATATGAGATACATGGTTATGTTATTCGGCATGGATTCGAATCAGATGTCAAGGTCTCTTCAGCTCTTGTAGATATGTATTCAAAGTGTGGCTTCTTGCACTTGGGAACTCGAGTTTTCAGGATAATGCCAGAACGGAATATAGTTTCTTATAATTCCATTATTTCTGGTCTTGGTTTGCATGGATGTGCTTCTGAGTCTTTTAAGATGTTTGATGAGATGTTGGCAAAAGGATTAATGCCTGATGAAGCCACATTTTGCGCTCTCCTTTGTGCTTGTTGTCACGCTGGCCTTGTCAAAGACGGCCGGGAGATTTTCCATCGAATGAAAGATGAATTTCACATCATGGCTATGCCTGAGCACTATGTTTTCATGGTTAAGCTTCTTGGCAGTGCTGGCCACTTAGAAGAGGCTTACAAACTCGTTCAGTCCTTACCGGAACCAGTAGACAAGGCCATCCTTGGAGCCCTATTATCATGCTGTAATTCTAGTGGAAATTCCAAGATGGCAGAAAAAGTAGCTCAGCAACTTTTTGAAAGTAATCCTGATGATAATGCTTACAGCGTTATGCTTTCTAATATATATGCAGGTGATGGGAGGTGGGACGAGGCAAAGAACTTGAGAGACAGAATAACAGGAGGTCAGAGAAAAATGCCCGGACTGAGCTGGACTGAAGGAAGTTTCTGCTAA 1665 0.4336 MLIRFHWLQSELSNCICKSLLRAKQLHALLLRTHLLEDPFYATKLVRLYAANNDIHSAYQVFDESSTRSVYLWNSIIRAYAQSSRFDSAISLFRTMFGADISPDNYTYACVIRACCDNFDFGMLRLVHGAAVASGFGMDPICCSALVAAYSKLGFVNDAHRVFNGIAAPDLVLWNSLISGYVCSGSWEIGMQMFNSMRHVGGKPDGFTLAGLLGGITDSSLMSIGQGLHGLSLKSGLDSDSHVGSLLVSMYSRCKCMASAYSVFFSIFQPDLVTWSALIAGYSMSGEYEKALFYFRKLNKGNKKPDSVLIASALAAIAQAANIGPGYEIHGYVIRHGFESDVKVSSALVDMYSKCGFLHLGTRVFRIMPERNIVSYNSIISGLGLHGCASESFKMFDEMLAKGLMPDEATFCALLCACCHAGLVKDGREIFHRMKDEFHIMAMPEHYVFMVKLLGSAGHLEEAYKLVQSLPEPVDKAILGALLSCCNSSGNSKMAEKVAQQLFESNPDDNAYSVMLSNIYAGDGRWDEAKNLRDRITGGQRKMPGLSWTEGSFC* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g0015 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Ahy17g0015 554 PANTHER OS01G0545900 PROTEIN 6 550 - -
Ahy17g0015 554 Pfam PPR repeat 172 199 IPR002885 -
Ahy17g0015 554 Pfam PPR repeat 273 298 IPR002885 -
Ahy17g0015 554 Pfam PPR repeat 142 164 IPR002885 -
Ahy17g0015 554 Gene3D Tetratricopeptide repeat domain 4 122 IPR011990 GO:0005515
Ahy17g0015 554 Gene3D Tetratricopeptide repeat domain 123 220 IPR011990 GO:0005515
Ahy17g0015 554 Gene3D Tetratricopeptide repeat domain 221 326 IPR011990 GO:0005515
Ahy17g0015 554 Pfam PPR repeat family 371 420 IPR002885 -
Ahy17g0015 554 Pfam PPR repeat family 69 116 IPR002885 -
Ahy17g0015 554 SUPERFAMILY TPR-like 50 532 IPR011990 GO:0005515
Ahy17g0015 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Ahy17g0015 554 Gene3D Tetratricopeptide repeat domain 444 550 IPR011990 GO:0005515
Ahy17g0015 554 Gene3D Tetratricopeptide repeat domain 327 443 IPR011990 GO:0005515
Ahy17g0015 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Ahy17g0015 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 437 IPR002885 -
Ahy17g0015 554 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Ahy17g0015 554 TIGRFAM PPR: pentatricopeptide repeat domain 71 104 IPR002885 -
Ahy17g0015 554 TIGRFAM PPR: pentatricopeptide repeat domain 410 437 IPR002885 -
Ahy17g0015 554 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Ahy17g0015 554 TIGRFAM PPR: pentatricopeptide repeat domain 374 408 IPR002885 -
Ahy17g0015 554 Pfam E motif 492 550 IPR046848 -
Ahy17g0015 554 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 550 - -
Ahy17g0015 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g0015 Ahy-Chr17 227104 230421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g0015 29 550 Glycoside Hydrolase AT3G49170 29.944 1.33e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g0015 - - gmx:100820049 814.683