Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3483 ATGTTCAACCACCCTTGTTTTTCTTGCTATCTATGTGAACGTGATCACTGCCTTCATCATCATCGTTATCATGCTTTTGAGGGGCAAAACCAGATACCCTTTTACAAGAATCATCGGGTTATTGATATTGATACCCTTCAGCTTCAAGAGGCTTTTTCTCGTGTTTCATTAACACCCCACAATAATAATCCTGATTTTTCTGGTCAACGGTCAACCTTCGATGAAGAAGAAGAAGGGTACGAATACAAGTACCCTTTTGTTTCTCCTAATCCTTCATCCTATTTGGTGCCTCCATCGATGCAACATTCTAACACAGTTCCAATGAATGAGTCTTTGATGATCAATGCTAATAATAGCAGAAGAAATGTTCATCGGAATTTCAATGGTACTAGGAGTCCACAGAGTTATTGGTCTCAGCGTCCTTGTTCGTCCGTGAATTATTTGAGGGGGAAGATTCTGGATTTGGCTAAGACTCAATGTGGATGCAGGGTTTTGCAGGACACCATGAAAGGGTTAACATCAAAGGAAGAGGTTTTTGTTTTTTTCCAAGAGCTTGTTGATCATAATGTGATTGAGTTGATGGGGCACTCTTTTGGGAACTACGTTTTTCAGAAGTTGGTTGAGATTTGCAGTGAGGAACAAATCACTACCATTGTTTTCAATGCGACTAAGAATGTCCTTAAGTTTGTGAATCTTTGCCTTGACATTCATGGTACTAGGTCTGTTCAGAAGTTATTGGAGCATGTAACAAACCAAGAACAAAGATTATGTATAATGTCGGCGCTGACACCAAGTGTTGTTGCTTTGTCTACTAACACGAATGGTCTTCATGTGGTTGATCACTGTGTCAAGCATTTCTCAAGTGAAGATACTAAGTATATGCTGAACATTGTAGCAACCAACTGTTTCAAGATTGCAACAGATAAAAGTGGTTGCTGTGTAATTCAGCAATTTGTTGACCATGCTCCCGGTGAATCCAAAGATTTATTGATGGCTGGGATCATACTAAATGCTCCACTCCTCGCCGAAAACTGTTATGGGAACTATGTGGTGCAACATTTAGTGTCACTGAAAATAGCAAGAGTGACAAAGAGTCTGATGAAACAGCTAGAAGGCAAGTTTGTGTCAATGTCATGCAACAAGTATGGTAGCAATGTTGTGGAGAAGTTCTTCCAAGATTCAGGGGAAAGCCATTCAAGGAGCATTATCTTAGAGTTGCTACATTATCCAAATGTCTCAATGCTTCTTGTGGATCCATATGCTAATTTTGTCATCAGTTCTGCAGTCATAGTTTCCAAGGGTGGCACACAAGAGGAACTGCTTAAGGTGATTAAACAACATTCTCCAATGATGCGTAGCAACCATTATGGCAAGAAACTACTTGGTAGATTGAGGAAATTCCTATGTCACGTTTAG 1416 0.399 MFNHPCFSCYLCERDHCLHHHRYHAFEGQNQIPFYKNHRVIDIDTLQLQEAFSRVSLTPHNNNPDFSGQRSTFDEEEEGYEYKYPFVSPNPSSYLVPPSMQHSNTVPMNESLMINANNSRRNVHRNFNGTRSPQSYWSQRPCSSVNYLRGKILDLAKTQCGCRVLQDTMKGLTSKEEVFVFFQELVDHNVIELMGHSFGNYVFQKLVEICSEEQITTIVFNATKNVLKFVNLCLDIHGTRSVQKLLEHVTNQEQRLCIMSALTPSVVALSTNTNGLHVVDHCVKHFSSEDTKYMLNIVATNCFKIATDKSGCCVIQQFVDHAPGESKDLLMAGIILNAPLLAENCYGNYVVQHLVSLKIARVTKSLMKQLEGKFVSMSCNKYGSNVVEKFFQDSGESHSRSIILELLHYPNVSMLLVDPYANFVISSAVIVSKGGTQEELLKVIKQHSPMMRSNHYGKKLLGRLRKFLCHV* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3483 471 ProSiteProfiles Pumilio RNA-binding repeat profile. 224 260 IPR001313 GO:0003723
Ahy16g3483 471 CDD Pumilio 142 464 IPR033712 GO:0003723
Ahy16g3483 471 Gene3D - 136 469 IPR011989 -
Ahy16g3483 471 ProSiteProfiles Pumilio RNA-binding repeat profile. 184 221 IPR001313 GO:0003723
Ahy16g3483 471 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 122 468 IPR033133 GO:0003723
Ahy16g3483 471 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 59 463 - -
Ahy16g3483 471 ProSiteProfiles Pumilio RNA-binding repeat profile. 369 405 IPR001313 GO:0003723
Ahy16g3483 471 ProSiteProfiles Pumilio RNA-binding repeat profile. 296 332 IPR001313 GO:0003723
Ahy16g3483 471 Pfam Pumilio-family RNA binding repeat 152 166 IPR001313 GO:0003723
Ahy16g3483 471 Pfam Pumilio-family RNA binding repeat 229 262 IPR001313 GO:0003723
Ahy16g3483 471 Pfam Pumilio-family RNA binding repeat 341 354 IPR001313 GO:0003723
Ahy16g3483 471 Pfam Pumilio-family RNA binding repeat 301 335 IPR001313 GO:0003723
Ahy16g3483 471 Pfam Pumilio-family RNA binding repeat 266 295 IPR001313 GO:0003723
Ahy16g3483 471 Pfam Pumilio-family RNA binding repeat 374 407 IPR001313 GO:0003723
Ahy16g3483 471 Pfam Pumilio-family RNA binding repeat 189 219 IPR001313 GO:0003723
Ahy16g3483 471 PANTHER PUMILIO HOMOLOG 15 59 463 - -
Ahy16g3483 471 SUPERFAMILY ARM repeat 144 465 IPR016024 -
Ahy16g3483 471 SMART pum_5 224 260 IPR001313 GO:0003723
Ahy16g3483 471 SMART pum_5 261 296 IPR001313 GO:0003723
Ahy16g3483 471 SMART pum_5 297 332 IPR001313 GO:0003723
Ahy16g3483 471 SMART pum_5 333 368 IPR001313 GO:0003723
Ahy16g3483 471 SMART pum_5 147 183 IPR001313 GO:0003723
Ahy16g3483 471 SMART pum_5 369 405 IPR001313 GO:0003723
Ahy16g3483 471 SMART pum_5 185 220 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3483 Ahy-Chr16 152158663 152162636 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3483 - - adu:110272902 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3483 16 152158663 152162636 Ahy16g3483 16 152158663 152162636 ECH