Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3329 ATGAGTTTCACTTTCATCAAAAAATTCGTTACTGAGTTGACTCGCTTCCCTTACACCTCCGCTTTTGTTCTCGCGTTCATCACTGTCGCAGCAGCTGCCGTCAGATTCCGCCGTCTGTCCAAACCGACGTCGTTTACGATGTCTTCTTCATCAGTAAACGACCCCGTTCAGCGCAACCGCATCTTCTCGAGCAAGCTCTACTTCGATGTGCCTCGCTCCAAGGTTCCGATTATCTATTCTGCATCTTATGACATATCCTTTCTCGGCATTGAGAAACTGCACCCGTTTGATTCTTCTAAATGGGGGCGAGTTTGTAGATTCCTAGTGTCGTTTGGTGTTCTGGATAAGAAATGCATTGTTGAGCCTCTTGAAGCTTCAAAGGATGATCTTTTAGTGGTGCACTCAGAATCGTACTTGAATAGCCTGAAGGAAAGTTCAAATGTGGCTACAATAATTGAGGTCCCTCCGGTGGGGTTATTTCCCAATTGTCTTGTGCAACAAAAAGTTCTTCATCCATTCCGGAAGCAGGTTGGTGGAACTATTTTGTCTGCAAAACTTGCAAAAGAGAGAGGATGGGCCATTAACGTAGGAGGAGGATTTCATCATTGCTCTGCAGAAAAAGGAGGTGGATTTTGTGCTTATGCAGATATTTCTCTTTGCATCCACTTTGCTTTGGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACAGACTTTGCCTATGATAGCCGAGTCTACATTTTGGACATGTACAACCCTGGAATATACCCTTTGGATTATGAGGCAAGGAACTACATAAATCAGAAAGTTGAAGTGAAGAGTGGGACACTCACGGAAGATTACCTGCAGAAATTAGATGAAGCACTAGAGGTTGCTGGGCGTAGCTTTGACCCTGAGTTGATAGTTTACAATGCCGGAACTGACATCTTAGATGGTGATCCATTAGGAAGGCTAAAGATTAGTCCTGATGGGATTACCCTCAGAGATGAGAAAGTTTTTCGGTTTGCTCGTGAGAAGAACATTCCTATTGTCATGCTCACGTCAGGTGGTTATATGAAATCCAGTGCTAGAGTCATTGCAGATTCAATAGTCAATCTGTCCAAGAAATGCTTGATAGAAGACAAACAGGATTCCTAA 1170 0.4333 MSFTFIKKFVTELTRFPYTSAFVLAFITVAAAAVRFRRLSKPTSFTMSSSSVNDPVQRNRIFSSKLYFDVPRSKVPIIYSASYDISFLGIEKLHPFDSSKWGRVCRFLVSFGVLDKKCIVEPLEASKDDLLVVHSESYLNSLKESSNVATIIEVPPVGLFPNCLVQQKVLHPFRKQVGGTILSAKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFALVRLNISRVMIIDLDAHQGNGHETDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTLTEDYLQKLDEALEVAGRSFDPELIVYNAGTDILDGDPLGRLKISPDGITLRDEKVFRFAREKNIPIVMLTSGGYMKSSARVIADSIVNLSKKCLIEDKQDS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3329 389 CDD HDAC_classIV 94 377 IPR044150 GO:0004407|GO:0016575
Ahy16g3329 389 Pfam Histone deacetylase domain 94 375 IPR023801 -
Ahy16g3329 389 PANTHER HISTONE DEACETYLASE 11 49 387 - -
Ahy16g3329 389 PANTHER HISTONE DEACETYLASE 11 49 387 - -
Ahy16g3329 389 SUPERFAMILY Arginase/deacetylase 72 377 IPR023696 -
Ahy16g3329 389 PRINTS Histone deacetylase superfamily signature 309 319 IPR000286 -
Ahy16g3329 389 PRINTS Histone deacetylase superfamily signature 232 247 IPR000286 -
Ahy16g3329 389 PRINTS Histone deacetylase superfamily signature 198 221 IPR000286 -
Ahy16g3329 389 Gene3D Histone deacetylase domain 75 388 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3329 Ahy-Chr16 150242247 150247418 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3329 K11418 - gmx:100781276 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3329 16 150242247 150247418 Ahy16g3329 16 150242247 150247418 ECH
Ahy16g3329 16 150242247 150247418 Ahy6g2621 6 111478136 111482045 hybridization