Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3068 ATGCTCTTCCACAACCCCCTTCGTCACTCACTATCTCTCTTACTTTCCACACTCAAACAAAAACCCACTCCTACATTCTCATTCTCCCTTCTTCATCACCGTCACCGCTTCTCTTCTTCCTGGCTCTCCGTTCGCGGAAACCCCCTCATTAAATGGCCAACCCTGCCAATCCCTCAACCCCCTCCCAATCCCAATCCCGAACCCCAACCCCACTCCAATTTCTCGCCGCGCGATTTCTCCGCAATTGCCAATATATTCGCCGACTCTTCCATCTCTCCCGGATCGCTCCTCCATGCGGAACTGGACCGCTCCGGGATTGAACCGGGTTCAGAGCTACTGCTCGCCGTGTTTGACCGTTTCGGTTCGTCGCCCAAGCTGCTTCACTCGCTGTTCCTGTGGGCCGAGAAGCAACCCGGGTTCAGACCTAATTCGAAGCTCTTCGACGCTGTGGTCAACGCTCTCGCTAAGTCCAGGGAGTTTGACTCCGCTTGGACGCTGATTCTTCATCAGATCGATGATGGAAACGACGAGGGAGAAGCTTTGGTTTCCGTTGCCACCTTCGCTATCATGATTCGACGCTATGCACGTGCAGGTATGGTGCAACCTGCAATTCGTACATTTGAGTTTGGAAGAAAGCACAATTCAATTATAGATTCTGGATCGGAATCGAGTTTATTTGAGATATTGTTGGATTCACTTTGCAAAGAAGGGTCTGTTAGGGCAGCTTACGAGTATTTATGTCTAAGAAAGAAGATGACCCAGGGTTGGGTTCCTTCCATTCGGGCTTATAACATAATGTTAAATGGATGGTTTCGGTCAAGGAAACTCAAACACGGTGAGAGACTTTGGGAGGAGATGAAGAAGGAGAATGTAAGACCAACTGTTGTGACATATGGTACCCTTATCGAAGGGTATTGTCGGATGCGTCGAGTTGAAAAGGCGCTCGAGATCGTTGGTGACATGATCAAAGAAGGAATTGCACCAAATGCAATAGTGTATAATCCAATAATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCCTTGGGGATGATGGAACGATTTCATGTTTTAGAAATTGGCCCTACCGAATCGACATATAATTCTCTGGTAAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTCATTCCAAGCTCCACCACCTATAATTACTTCTTTAGGTACTTCTCAAGATGCGGGAAGATTGAGGAAGGGATGAACTTGTATACCAAGATCATCCAATCCGGTTATACGCCTGATCGGCTAACATACCATCTTTTGGTGAAGATGTTATGTGAAGAGGAAAGGTTAGACTTGGCAGTTCGAGTTAGCAAGGAAATGAGACATAAAGGATTGGACATGGACTTGGCTACAAGTACCATGTTAGTTCATTTGCTATGCAAAATGCGTAGGTTGGAAGAGGCTTTTGCTGAATTCGAGGACATGATACGAAGGGGTATAGTTCCTCAGTACCTTACTTTCCAGAGACTGAATGCGGAGTTAAAGAAACAGGGTATGACTGAAGTGGCACAAAAGCTTTGCAATTTGATGTCTTCCATTCCCCATTCTACCAGCTTGCCAAATACTTACAGTGAAGACAACAATGATGCGCGTGCAAGAAGGAATTCTATAATTCAGAAGGCCCAGGCATTTTCTGATATGTTGAAAAACTGTAACGACCCTCGAGAACTCGAAAAGTATAAATGTTCTTCTGAAAATGATGTCTCAAGTGCGAACGGTTTGATAGAGGATATTGAGAGAAAGATAAGTGCCAAACGAACATCTTCTGTGATTTGA 1839 0.453 MLFHNPLRHSLSLLLSTLKQKPTPTFSFSLLHHRHRFSSSWLSVRGNPLIKWPTLPIPQPPPNPNPEPQPHSNFSPRDFSAIANIFADSSISPGSLLHAELDRSGIEPGSELLLAVFDRFGSSPKLLHSLFLWAEKQPGFRPNSKLFDAVVNALAKSREFDSAWTLILHQIDDGNDEGEALVSVATFAIMIRRYARAGMVQPAIRTFEFGRKHNSIIDSGSESSLFEILLDSLCKEGSVRAAYEYLCLRKKMTQGWVPSIRAYNIMLNGWFRSRKLKHGERLWEEMKKENVRPTVVTYGTLIEGYCRMRRVEKALEIVGDMIKEGIAPNAIVYNPIIDALAEAGRFKEALGMMERFHVLEIGPTESTYNSLVKGFCKAGDLVGASKILKMMISRGFIPSSTTYNYFFRYFSRCGKIEEGMNLYTKIIQSGYTPDRLTYHLLVKMLCEEERLDLAVRVSKEMRHKGLDMDLATSTMLVHLLCKMRRLEEAFAEFEDMIRRGIVPQYLTFQRLNAELKKQGMTEVAQKLCNLMSSIPHSTSLPNTYSEDNNDARARRNSIIQKAQAFSDMLKNCNDPRELEKYKCSSENDVSSANGLIEDIERKISAKRTSSVI* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3068 612 Pfam PPR repeat family 363 408 IPR002885 -
Ahy16g3068 612 Pfam PPR repeat family 258 307 IPR002885 -
Ahy16g3068 612 Pfam PPR repeat 332 355 IPR002885 -
Ahy16g3068 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Ahy16g3068 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Ahy16g3068 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Ahy16g3068 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Ahy16g3068 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Ahy16g3068 612 Pfam Pentatricopeptide repeat domain 457 509 IPR002885 -
Ahy16g3068 612 TIGRFAM PPR: pentatricopeptide repeat domain 367 399 IPR002885 -
Ahy16g3068 612 TIGRFAM PPR: pentatricopeptide repeat domain 474 503 IPR002885 -
Ahy16g3068 612 TIGRFAM PPR: pentatricopeptide repeat domain 402 434 IPR002885 -
Ahy16g3068 612 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Ahy16g3068 612 TIGRFAM PPR: pentatricopeptide repeat domain 296 330 IPR002885 -
Ahy16g3068 612 TIGRFAM PPR: pentatricopeptide repeat domain 262 294 IPR002885 -
Ahy16g3068 612 TIGRFAM PPR: pentatricopeptide repeat domain 437 469 IPR002885 -
Ahy16g3068 612 MobiDBLite consensus disorder prediction 53 71 - -
Ahy16g3068 612 MobiDBLite consensus disorder prediction 53 74 - -
Ahy16g3068 612 Gene3D Tetratricopeptide repeat domain 248 373 IPR011990 GO:0005515
Ahy16g3068 612 Gene3D Tetratricopeptide repeat domain 374 604 IPR011990 GO:0005515
Ahy16g3068 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Ahy16g3068 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Ahy16g3068 612 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 91 602 - -
Ahy16g3068 612 Gene3D Tetratricopeptide repeat domain 110 247 IPR011990 GO:0005515
Ahy16g3068 612 PANTHER LEAF PROTEIN-LIKE 91 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3068 Ahy-Chr16 146216749 146219840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3068 92 553 Miscellaneous Gene Families AT4G11690 25.265 2.08e-46 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3068 - - gmx:100793484 871.692