Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3003 ATGGATTCTGGTTCTCCTCGCAATCGCATTGATCAGTTTTATCCTTCGAAGAAAAGGAAAGCGGCTGCGGTGTCGCCTGCTTCTATGCCTGGGAGATCTGAGAAAGGTGCAAAGCATCATGGGGTTGATGGGTCTCCTAGTGCCAAAGGAACTTTGGACAGTTACTTGGTTTCTTCACAAGATGATTGCCATGCTGCCAGGCTGTCCAATGTGGCCACCCCGGTTGGGGAGTCTTTGGTTAGGCAGCATTCGGTTAAGAGAAATTTAGCTTTAGATGTTAGTAGTTGTATTGATTATGAGCAAAGTAAGCTGCCTGTTTTGTCGGCCCAAGGGAATGAGCTGGCACAAGCTTTGCCTTCAGGACTAATGGATGAATCATCGAAGGTGAGTTCCATGGTGGTTGGAGACCCTGGCCAGGAAAAAGGATGGAGTGGTATGGCAATGGGTGTGCCAAACTCGGATGCCAAACGATTTGCGGCAGAGTTTCTGTCCTTGTATTGCAGTGGAGTAGACCAGATTCGTTTGTCGTCGGAAATGAAAGAAGATGCTCATACCAGACATTGTTCTCTTACATTAGTAGATAAAAATATTAGTTTGGCGGAGAAGTGTGAGGACCCCACTAGTGAGCCACATTTTGGTAGTGAAAACATCTCTAGTGATGATATTCCTAAAGAAATCTGTTCTGGTGTTGTTGGTAGTGACCCGAGCCTTCGAAAATGTACCCATACACCTACTTCAAGTATGAATCCTGCTGAATTTAATACGCCAGGATCCTTGGTTGTCAAAGCATGTGTCAAGGAGACTCCAAAGTCAACACGTGGAAGCTCAAGTTTTTCACCTGGCTCAGCTTTTTGGAATGAAGCGATTCAAGTTGCCGATGGTTTGTGTGTTCCTGTGACTCATGATTCTTCTATTGTTATGCACAAGATTAATGTGGTGGATGAGCAACATGAAATGGAGAATTCATCTAATTTACAAAGTCATGATGGAAAGCTGAGGGAAGTAATGGATCAATGCAAGAGCAGATTTTGGAAGGGGGAAGCAGGGATGCACACCAAAGATTCCAAGAAAGAAGTCTCTGTTCTTCCTGTGAAGCATTTTGATTTTTCATTAGAGGATAATATTTTGGGTGAAAGTACCCTGCAAGATCGTGGTGTTGGTAATCTGACTAATGTTACTTGTGAGGGTGGTAGACAGTATGAGTGTGGTTCTGTAACAGATCATAGATATCAAAAGATTGATGAAGGGAAGGAGAAGCCTTTAGTAGATGCAGTATGCAAAAGAATGAATTTTTCAAGTCAGGATAATATTAGTATGACATTTAATTCACCCCTCAATGAGGTTGCGATGGCAGTTAATACACATAAATCTGATGAAGCTTGTACTCCGTCGAGTAGTCTGTCGTTTAAGAATCATTTAGAGCTAAACAGCTGGCTTCCACCTGAAATATGCAGTATATATAGAAAGAAAGGAATCTCAAAGCTTTATGAATGGCAGGTTGACTGTCTTCGGGTGGATGGTGTCCTTCAGAGAAGAAATCTTGTATATTGTGCTTCTACAAGTGCTGGTAAGAGTATCGTTGCTGAGATTTTAATGCTGCGGAGGGTGATATCTACTGATAAAATGGCAATACTTGTTCTTCCATATGTGTCAATCTGTGCTGAAAAGGCAGAACACCTTGAACGTCTTCTTGAGCCACTTGGTAAATATGTTCGTAGTTATTTTGGGAACCAAGGTGGTGGAACACTTCCTAAAGACACTTCTGTGGCTGTTTGCACGATAGAGAAGGCAAACTCCTTAATCAATAGATTATTGGAAGAGGGCCGTTTATCAGAGATGGGAATTATTGTGATAGATGAGTTGCATATGGTTGGTGATGCAAATAGAGGTTATCTTCTGGAACTCATGCTGACAAAACTTCGTTATGCGGCAGGAGAAGGTATTTCAAAATCAAGTGAAGGAGAAAGTTCAGGTGGAAGCAGCGACAATTCTGATCCTGCTCAAGGTCTGCAAATTGTTGGAATGAGTGCAACAATGCCAAATGTTGCAGCAGTTGCTGACTGGCTTCAAGCAGCACTATACCAGACAGAGTTCCGGCCAGTTCCTTTAGAAGAATATATAAAAGTTGGTAATTCCATATATGACAAGAGTATGGAACTTTCTAGAACAATCTCAAAGGCAGCTGATCTTGGTGGTAAAGATCCAGATCATGTTGTTGAGCTTTGTAATGAGGTTGTTCAAGAGGGACAATCAGTCTTAATATTTTGCTCTAGTCGAAAGGGTTGTGAATCGACAGCAAGGCATGTTGGAAAGTTCCTTAAAAGCTTTATTGCTAATATTCAGGAGAATGACTGTGAGTTTGCTGATATTACTTCTGCTATCGACTCGTTGAGAAAGTGTCCTGCTGGGTTGGATCCCGTATTAGAGGAAACCCTTCCTTCGGGTGTTGCATTTCACCATGCTGGCCTCACGGTTGAGGAAAGAGAGATAATTGAAACCTGTTACCGAAAAGGACTTTTACGTGTTTTAACTGCCACATCAACCTTAGCGGCAGGGGTTAATCTGCCAGCTAGGAGGGTTATTTTCCGCCAGCCTAGAATTGGTCGTGATTTTATAGATGGGACGAGGTACAAACAGATGGCTGGTCGTGCTGGTCGTACTGGAATTGATACAAAAGGAGAAAGTGTACTTATCTGCAAACCAGAAGAGGTAAAAAGAGTTATGGGGCTTCTTAATGAAAGCTGTCCACCATTACATTCCTGTTTATCTGAAGATGTGAATGGAATGACTCATGCAATCTTAGAAGTTGTGGCTGGTGGAATAGTTCAAACAGCTAGTGATGTTCATCGCTACGTTAGATGTACTCTTTTGAACTCCACAAAACCATTCCAAGATGTGGTAAAGTCTGCACAAGAATCCCTCCGCTGGTTGTGCCAAAGAAAGTTTCTTGAATGGAATGAAGACACTAAACTTTACAGTACAACACCTCTTGGACGTGCATCATTTGGCAGCTCTCTCCCTCCAGAAGAATCACTTATTGTGCTCGCTGACCTTTCAAGGGCTAGGGAAGGATTTGTCCTCGCATCTGACCTGCACTTAGTTTACTTGGTCACTCCAATCAATGTTGATGTTGAGCCAGATTGGGAATTGTACTATGAGCGATTTGTGAAATTGTCTCCACTTGACCAGTCAGTTGGTAATCGAGTAGGTGTGACGGAACCATTCTTGATGCGTATGGCACATGGGGCACCTATACGTTCTTATAACAAGTCAAGCGACAGTACAAGAGGGATAAACAATAAACGAGGAAATCAACTCGGGATCTCTGATGCAACTGCACTCTCAGATGATCAAACACTTCGTGTCTGTAGACGATTCTATGTAGCTCTTATTTTGTCGCTGCTAGTTCAGGAAACTCCTGTGGGCGAGGTTTGTGAAGCATATAAAGTTGCCAGAGGAATGGTTCAAGCCTTGCAAGAGAATGCTGGAAGGTTTGCATCTATGGTTTCTGCATTCTGTGAGAGGCTTGGCTGGCATGATCTTGAAGGCTTAGTTGCTAAATTTCAGAATCGTGTGTCATTTGGAGTCAGAGCAGAGATTGTAGAGCTTACTGCCATTCCCTATGTTAAAGGTTCTCGAGCTAGAGCACTCTATAAAGCAGGTTTACGAACACCTCTTGCAATTGCTGAAGCTTCGGTACCAGAAATAGTTAAGGCGCTTTTTGAATCTTCATCATGGGCAACAGAAGGCTCTGCGAAACGGAGTTTACAATTTGGTGTGGCGAAGAAGATCAAGAATGGTGCTCGAAAGATTGTTCTTGATAAAGCTGATGAGGCAAGGGTTGCTGCTTTCTCAGCATATAAGTCACTTGGATATGATGTCCCACAGTTTGCTCCTCCCATATTTACTGCTGCTTCTGATTCTACCAAGAAAGAAGCTGGAAGTAACTCTGGAAGTGACACAGCTCACACTAGTCATAGTTTTGTTGATGCAGTCCACAATGATAGTTCTAATGAAGTTGCTTTAGCAAGACAGAGACAAGATTCTGAAAATGATGCTCTAGTTTATCTGAAAGGAAAACCAATCAGTGAGGTTCCATTTAATTTTTCTACTGAAAATTCTGAAGCTCCAGTTATTGGATCTATAAGGAATGAGCCCAATGCTGCTTTTGACCCTACCAAGAATGTAGATCTGCCCACTCTCTCTGATCAGTTACAGAATCCAACTGATACCACCGTCATACATGATGGGTGCCTAGCTCGTGGTTCAGAGGACCAACATCATAGTAGAATTTTAGCAAGTGGAGATATGGAAAGTTCCACCCAGAGAGGTCCCATTAATGCAGGTAGTAGTCCTGGTGGGATTGATTCATTTCTGGATCTATGGGAAACTTTGCCAGAGTTCTACTTTGATATCCACTATATCAAACGATTGGAACTGCACTCTCCTGCTCCTTTTGAAATACATGGCATAGCCATCTGTTGGGAATGCTCTCCTGTATACTACATTAACCTTCCCAGGGATATTTTGTTGTCTACGGGTAAAAGCGATGACAGTTTATCCTTGAGTGCATGCAGTCACAAGCTGAAAGTTTCATCTTCTAATTCTAAGCATGATTTGGAGATTGCCAAGGATAGATGGAGCAGGATTAGTAAAATATTAGGAAAAAGAGATGTCAAAAAGTTCACTTGGAATTTGAAGATTCAAATTCAGGTTTTAAAAAAGCCTGCAGTTTCACTTCAGAGGTTTGGTTGCTCTTACAATCTTGGAAATAATGAAGACTTTGAAATTGTAGATAGTTCATATGTATTGCTACCACGTGTCCTCATTAAAGATGTAATTGACATGTGTATTGTGACTTGGATACTGTGGCCTGATGAAGAGAGGAGCTCAAATCCAAACCTGGAGAAGGAGGTAAAGAAGAGGTTATCCTCTGAGGATGCTGCAGCTGCTAATCAGAGTGGCAGGTGGAAGAATCAGATGCGAAGAGCTGCACATAATGGTTGCTGCCGACGGGTTGCCCAAACAAGAGCATTATGTTCTGTTCTTTGGAAATTACTTGTTTCTGAAGAACTTGTTGAAGTGCTTATGAGAATAGAAATCCCTTTGGTAAATGTTCTTGCTGACATGGAACTATGGGGAATTGGTGTCGACTTGGAGAGATGCATTCAGGCTCGTAAATTGTTGGTGAAAAGGCTGAAGTATCTTGAAAAGGAAGCTTATAAGCTGGCTGGGATTACATTTTCATTGAACATGCCAGCAGACATTGCAAAGGTGCTCTTTGAACACTTGATGCTGCCTATTCCTGATGGCCGAAATAAGGGGAAAAAACATGCAAGTACTGGAAAGCAATGCTTGGATGCATTAAGGCATGTACATCCCATTGTTCCAATCATTAAAGAGCATCGAACAATGGCAAAGCTCTTGAACACTACACTTGGATCAATTTGTTCTCTAGCTAGGCTATCGGTAAGCACACAGAAGTATACATTACATGGGCATTGGCTTCAGACATCTACAGCAACTGGTCGACTTTCAATGGAGGAACCTAATCTTCAGTGTGTTGAACATACAGTAGACTTCAAAATGGAAGAGGATAAAAGCGAAGGAGATGCTGATGAAAATCATTACAGCATTAATGCTCGTGATTTCTTTATTCCTACTCAGGACAACTGGTTACTGTTAACAGCAGACTATTCTCAAATAGAATTGAGGGTGATGGCACACTTCTCTAAAGACTCTTCTCTCATTGAGCTTCTCAGTAAGCCTGATGGTGATGCCTTTACAATGATAGCGGCAAGGTGGATTGGGTGTGCAGAGGATTCTGTCAGCTCCAATGAGAGAGATCAGACTAAAAAGATGGTTTATGGAATTCTTTATGGAATGGGTGCCAATAGCCTTGCTGATCACCTTGATTGCACTTCTGATGAAGCTGCAGAAAAGATTAGTTATTTCAAAAGCTCTTTTCCTGGTGTTTCTTCTTGGCTCAATGAAGTTGTTTCATCTTGTCGTCTCAAAGGATATGTCGAGACTCTTAAGGGAAGAAAACGATTTTTGTCTAAAATAAAATTTGGCAACAGTACAGAAAAATCAAAAGCTCAAAGGCAAGCTGTGAATTCCATTTGTCAGGGATCTGCTGCAGACATAATCAAGATTGCAATGCTAAGAATTTACTCCGTGATTGTCGACGGTGTTGATAGTTCGGATTCTAGTTCTTCTATGGCAACCAAGTTTCACATGCTCAGAGATCGTTGCCGAATTTCATTACAGGTGCATGATGAGTTAGTGCTGGAAGTTGATCCTTCGGTGATAAGGGAAGCTGCCGCGCTGTTAAAGACAAGCATGGAGAATGCAGTCTCACTTCTTGTTCCTCTTCGTGCGAAAGTCCAAGTTGGGAGAACATGGGGATCTTTGGAGGCATTTGCACCGGACAGATAA 6438 0.4211 MDSGSPRNRIDQFYPSKKRKAAAVSPASMPGRSEKGAKHHGVDGSPSAKGTLDSYLVSSQDDCHAARLSNVATPVGESLVRQHSVKRNLALDVSSCIDYEQSKLPVLSAQGNELAQALPSGLMDESSKVSSMVVGDPGQEKGWSGMAMGVPNSDAKRFAAEFLSLYCSGVDQIRLSSEMKEDAHTRHCSLTLVDKNISLAEKCEDPTSEPHFGSENISSDDIPKEICSGVVGSDPSLRKCTHTPTSSMNPAEFNTPGSLVVKACVKETPKSTRGSSSFSPGSAFWNEAIQVADGLCVPVTHDSSIVMHKINVVDEQHEMENSSNLQSHDGKLREVMDQCKSRFWKGEAGMHTKDSKKEVSVLPVKHFDFSLEDNILGESTLQDRGVGNLTNVTCEGGRQYECGSVTDHRYQKIDEGKEKPLVDAVCKRMNFSSQDNISMTFNSPLNEVAMAVNTHKSDEACTPSSSLSFKNHLELNSWLPPEICSIYRKKGISKLYEWQVDCLRVDGVLQRRNLVYCASTSAGKSIVAEILMLRRVISTDKMAILVLPYVSICAEKAEHLERLLEPLGKYVRSYFGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDANRGYLLELMLTKLRYAAGEGISKSSEGESSGGSSDNSDPAQGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVPLEEYIKVGNSIYDKSMELSRTISKAADLGGKDPDHVVELCNEVVQEGQSVLIFCSSRKGCESTARHVGKFLKSFIANIQENDCEFADITSAIDSLRKCPAGLDPVLEETLPSGVAFHHAGLTVEEREIIETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYKQMAGRAGRTGIDTKGESVLICKPEEVKRVMGLLNESCPPLHSCLSEDVNGMTHAILEVVAGGIVQTASDVHRYVRCTLLNSTKPFQDVVKSAQESLRWLCQRKFLEWNEDTKLYSTTPLGRASFGSSLPPEESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYERFVKLSPLDQSVGNRVGVTEPFLMRMAHGAPIRSYNKSSDSTRGINNKRGNQLGISDATALSDDQTLRVCRRFYVALILSLLVQETPVGEVCEAYKVARGMVQALQENAGRFASMVSAFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTAIPYVKGSRARALYKAGLRTPLAIAEASVPEIVKALFESSSWATEGSAKRSLQFGVAKKIKNGARKIVLDKADEARVAAFSAYKSLGYDVPQFAPPIFTAASDSTKKEAGSNSGSDTAHTSHSFVDAVHNDSSNEVALARQRQDSENDALVYLKGKPISEVPFNFSTENSEAPVIGSIRNEPNAAFDPTKNVDLPTLSDQLQNPTDTTVIHDGCLARGSEDQHHSRILASGDMESSTQRGPINAGSSPGGIDSFLDLWETLPEFYFDIHYIKRLELHSPAPFEIHGIAICWECSPVYYINLPRDILLSTGKSDDSLSLSACSHKLKVSSSNSKHDLEIAKDRWSRISKILGKRDVKKFTWNLKIQIQVLKKPAVSLQRFGCSYNLGNNEDFEIVDSSYVLLPRVLIKDVIDMCIVTWILWPDEERSSNPNLEKEVKKRLSSEDAAAANQSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELVEVLMRIEIPLVNVLADMELWGIGVDLERCIQARKLLVKRLKYLEKEAYKLAGITFSLNMPADIAKVLFEHLMLPIPDGRNKGKKHASTGKQCLDALRHVHPIVPIIKEHRTMAKLLNTTLGSICSLARLSVSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHTVDFKMEEDKSEGDADENHYSINARDFFIPTQDNWLLLTADYSQIELRVMAHFSKDSSLIELLSKPDGDAFTMIAARWIGCAEDSVSSNERDQTKKMVYGILYGMGANSLADHLDCTSDEAAEKISYFKSSFPGVSSWLNEVVSSCRLKGYVETLKGRKRFLSKIKFGNSTEKSKAQRQAVNSICQGSAADIIKIAMLRIYSVIVDGVDSSDSSSSMATKFHMLRDRCRISLQVHDELVLEVDPSVIREAAALLKTSMENAVSLLVPLRAKVQVGRTWGSLEAFAPDR* 2146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3003 2145 CDD SF2_C_Ski2 699 900 - -
Ahy16g3003 2145 Pfam DNA polymerase family A 1721 2136 IPR001098 GO:0003677|GO:0003887|GO:0006260
Ahy16g3003 2145 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 934 IPR001650 -
Ahy16g3003 2145 Gene3D - 478 700 IPR027417 -
Ahy16g3003 2145 SUPERFAMILY DNA/RNA polymerases 1692 2138 IPR043502 -
Ahy16g3003 2145 SMART helicmild6 806 888 IPR001650 -
Ahy16g3003 2145 SMART polaultra3 1878 2103 IPR001098 GO:0003677|GO:0003887|GO:0006260
Ahy16g3003 2145 PANTHER DNA POLYMERASE I 495 2143 IPR002298 GO:0003887|GO:0006261
Ahy16g3003 2145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 902 IPR027417 -
Ahy16g3003 2145 Gene3D - 1450 1711 IPR036397 GO:0003676
Ahy16g3003 2145 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 505 697 IPR014001 -
Ahy16g3003 2145 Gene3D - 708 908 IPR027417 -
Ahy16g3003 2145 PANTHER DNA POLYMERASE THETA 495 2143 - -
Ahy16g3003 2145 SUPERFAMILY Sec63 N-terminal domain-like 1116 1234 - -
Ahy16g3003 2145 Pfam DEAD/DEAH box helicase 508 681 IPR011545 GO:0003676|GO:0005524
Ahy16g3003 2145 Pfam Helicase conserved C-terminal domain 737 888 IPR001650 -
Ahy16g3003 2145 Pfam Helix-turn-helix domain 893 984 IPR046931 -
Ahy16g3003 2145 CDD DEXHc_POLQ-like 479 700 - -
Ahy16g3003 2145 Gene3D - 1075 1219 - -
Ahy16g3003 2145 SMART ultradead3 491 710 IPR014001 -
Ahy16g3003 2145 MobiDBLite consensus disorder prediction 1 53 - -
Ahy16g3003 2145 CDD DNA_pol_A_theta 1714 2138 - -
Ahy16g3003 2145 Gene3D Taq DNA Polymerase; Chain T, domain 4 1714 1823 - -
Ahy16g3003 2145 Gene3D - 1840 2135 - -
Ahy16g3003 2145 Gene3D - 1902 2046 - -
Ahy16g3003 2145 PRINTS DNA-polymerase family A (pol I) signature 2039 2055 IPR002298 GO:0003887|GO:0006261
Ahy16g3003 2145 PRINTS DNA-polymerase family A (pol I) signature 1985 1996 IPR002298 GO:0003887|GO:0006261
Ahy16g3003 2145 PRINTS DNA-polymerase family A (pol I) signature 1948 1973 IPR002298 GO:0003887|GO:0006261
Ahy16g3003 2145 PRINTS DNA-polymerase family A (pol I) signature 2007 2018 IPR002298 GO:0003887|GO:0006261
Ahy16g3003 2145 PRINTS DNA-polymerase family A (pol I) signature 1831 1853 IPR002298 GO:0003887|GO:0006261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3003 Ahy-Chr16 145053063 145071844 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3003 K02349 - gmx:100813857 3055.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3003 16 145053063 145071844 Ahy16g3003 16 145053063 145071844 ECH