Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2879 ATGTCAAAGCAAGCAAGTTCATACGTACCAAAGAACATCCTCATAACTGGTGCAGCTGGTTTCATAGCCTCTCATGTCACCACTAGGCTAATCAACAAGTACCCTAGCTACAAGATTGTAGCACTTGATAAGCTAGATTATTGTTCTAACATCAAGAATCTACAATGTTGTACTTCATCACCTAACTTCAAGTTCATCAAGGGTGACATAGCTAGCTCAGACATGGTGAATCATCTCTTGATAGAAGAGGAAATAGACACAATCATGCACTTTGCAGCACAAACCCATGTGGACAATTCATTTGGAAACTCCATGGAATTCACCTATAACAATATCTATGGCACCCATGTTCTTCTAGAAGCATGTAGAGTAACAAATTGCATTAAAAGGTTCATCCACGTAAGCACGGACGAAGTTTACGGCGAGACGGATTCCGAGACTGACATCGGAAACCATGAAGCCTCCCAACTTCTTCCAACCAATCCTTATTCCGCCACGAAAGCAGGCGCCGAGATGTTGGTAATGGCTTATCATAGATCTTACAATCTTTCTACAATAACTACTAGAGGAAACAATGTGTACGGTCCAAACCAATATCCTGAGAAGCTTGTCCCTAAATTCGTCCTTAGGGCGATGAAGGGACAAAAGCTTCCCATCCACGGCGACGGATCCAATGTTAGGAGCTACCTTTATTGCGGCGATGTAGCTGAAGCGTTTGATGTTATTCTCCACAAAGGAATGATTGGCCAAGTCTATAACATTGGCACCAAGAAAGAGAGAAGTGTATTAGATGTGGCAGAGCATATTTGCAAGCTTTTCAACATAAATTCAAAGGATGTTATTGAGTTTGTTCAAGATAGGCCATTTAATGATAAGAGATATTTCCTAGATGATCAAAAGCTCAAGAATCTAGGATGGGAGGAAAGAACTCCTTGGGAAGAAGGACTAAAGTTGACAATTGATTGGTACAAAAAGAATCCGGATTGGTGGGGAGACGTGTCGAATGCCCTGAATCCGCATCCGCGCTTCTCAGCCACCAATCTGGCTGACGAAGCTCAATGGTCGTTTCAATGTGGATACTCAAGGCTAGGAAGGTCATTTACTGAAGTAGGACGAAATAAAACATTTGTGAAATTTTTGATATATGGGAAGACGGGTTGGATTGGAGGGTTGCTAGGGAAGCTTTGTGATGAAGAAAGAATCCAATGGGAGTATGGAAAGGGAAGATTAGAAGATAAAAAGTCATTAATGGAGGATATAAGTAGGGTAAAGCCAACACATGTGTTAAATGCAGCTGGAGTGACTGGAAGGCCAAATGTTGATTGGTGTGAATCACATAAAGTTGAGACAATAAGGACTAATGTTGTTGGGACATTAAATTTGGCTGATGTTTGTAATGAAAAAGGATTGTATATGATGAATTTTGCAACTGGTTGTATATTTGAGTATGACAAAGACCATCCTCTTGGTTCAGGCATTGGCTTCAAGGAGGAGGACAAGCCAAATTTCATTGGTTCCTTCTATTCCAAGACTAAGGCCATGGTGGAGGATCTGTTGAAAAATTATGAGAACGTTTGCACACTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCTAGAAATTTCATTACCAAGATTTCTCGTTACAACAAGGTGGTAGATATACCTAACAGCATGACCGTGCTAGATGAGTTGTTACCTATATCCATTGAGATGGCTAAGAGGAACTTAAAAGGGATATGGAACTTCACCAATCCTGGGGTCATAAGCCACAATCAAATATTAGAATTGTACAGGGACTATATTGATCCAAAATTCAAGTGGCAAAATTTTAATTTGGAAGAACAAGCAAAGGTTATTGTTGCTCCCAGGAGTAACAATGAAATGGATGCCTCCAAGCTCAAGAAAGAGTTCCCAGACATGCTGAACATCAGAGATTCCATTATCAAGTATGTCTTTGAGCCCAACAAGAAAACTTAA 1986 0.4038 MSKQASSYVPKNILITGAAGFIASHVTTRLINKYPSYKIVALDKLDYCSNIKNLQCCTSSPNFKFIKGDIASSDMVNHLLIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCIKRFIHVSTDEVYGETDSETDIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYNLSTITTRGNNVYGPNQYPEKLVPKFVLRAMKGQKLPIHGDGSNVRSYLYCGDVAEAFDVILHKGMIGQVYNIGTKKERSVLDVAEHICKLFNINSKDVIEFVQDRPFNDKRYFLDDQKLKNLGWEERTPWEEGLKLTIDWYKKNPDWWGDVSNALNPHPRFSATNLADEAQWSFQCGYSRLGRSFTEVGRNKTFVKFLIYGKTGWIGGLLGKLCDEERIQWEYGKGRLEDKKSLMEDISRVKPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLNLADVCNEKGLYMMNFATGCIFEYDKDHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNQILELYRDYIDPKFKWQNFNLEEQAKVIVAPRSNNEMDASKLKKEFPDMLNIRDSIIKYVFEPNKKT* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2879 661 CDD dTDP_HR_like_SDR_e 378 650 - -
Ahy16g2879 661 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Ahy16g2879 661 Gene3D - 13 317 - -
Ahy16g2879 661 Pfam GDP-mannose 4,6 dehydratase 14 317 IPR016040 -
Ahy16g2879 661 Gene3D - 370 661 - -
Ahy16g2879 661 Pfam RmlD substrate binding domain 378 549 IPR029903 -
Ahy16g2879 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 378 652 IPR036291 -
Ahy16g2879 661 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 659 - -
Ahy16g2879 661 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 1 659 - -
Ahy16g2879 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 336 IPR036291 -
Ahy16g2879 661 Gene3D - 204 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2879 Ahy-Chr16 142745280 142748125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2879 12 323 Miscellaneous Gene Families AT1G02000 25.444 1.03e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2879 K12450 - gmx:100776241 1226.85