Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2538 ATGGGTATCAAGATTGGAATCAATGGTTTCGGAAGAATAGGTCGCTTAGTGGCCAGGGTGGCTTTGCAGAGGGATGACGTGGAGCTTGTAGCTGTCAATGATCCCTTTATCAATACTGATTACATGACTTACATGTTCAAGTACGATAGTGTGCATGGACAATGGAAGAATGCTGAAATTAAGGTTAAGGATGAAAAAACCCTTCTCTTTGGTGGCAAGCCTGTCACCGTTTTTGGCTGCAGAAATCCAGAGGAAATTCCATGGAGTCAGGCTGGTGCTGAATACATCATTGAGTCCACTGGAGTTTTCACTGATAAAGACAAGGCAGCTGCTCACTTGAAGGGTGGTGCAAAGAAAGTGATTATTTCTGCTCCTAGCGCGAATGCACCAATGTTTGTTATGGGTGTTAACGAGAAAGAATACAAGTCAGATATTAATATCCTCTCCAATGCTAGCTGCACAACCAACTGTCTGGCTCCACTTGCCAAGGTTATTAATGACAAGTTTGGAATTATTGAAGGTCTCATGACAACTGTACATGCTACCACTGCGACTCAGAAGACCGTTGATGGACCATCAATGAAAGACTGGAGAGGTGGTAGAGCTGCTGCCACCAACATCATTCCCAGCAGTACAGGAGCTGCTAAGGCTGTTGGTAAGGTGCTACCGGCACTGAACAACAAGTTGACGGGAATGGCGTTCCGAGTGCCCACCATTGACGTTTCAGTGGTGGACCTCACTGTTCGACTTGAAAAGGGAGCCAGCTACGACGAAATCAAAGCTGCTGTCAAGGAGGCTTCTGAAGGAAGCTTGAAGGGAATTCTTGGTTACACCGAGGACGACGTGGTTTCTTCTGATTTCGTCGGGGACAGCAGGTCAAGCATCTTTGACGCAAAGGCTGGGATTTCATTGAACAACAACTTTGTCAAGCTTGTCTCTTGGTATGACAATGAATGGGGATACAGTTCACGTGTTATTGACTTGGTCCGCCACATTGCCTCTGTTAAGTAA 1011 0.4599 MGIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFINTDYMTYMFKYDSVHGQWKNAEIKVKDEKTLLFGGKPVTVFGCRNPEEIPWSQAGAEYIIESTGVFTDKDKAAAHLKGGAKKVIISAPSANAPMFVMGVNEKEYKSDINILSNASCTTNCLAPLAKVINDKFGIIEGLMTTVHATTATQKTVDGPSMKDWRGGRAAATNIIPSSTGAAKAVGKVLPALNNKLTGMAFRVPTIDVSVVDLTVRLEKGASYDEIKAAVKEASEGSLKGILGYTEDDVVSSDFVGDSRSSIFDAKAGISLNNNFVKLVSWYDNEWGYSSRVIDLVRHIASVK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2538 336 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 106 IPR020828 GO:0051287
Ahy16g2538 336 SMART gp_dh_n_7 3 153 IPR020828 GO:0051287
Ahy16g2538 336 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 IPR020830 GO:0016620
Ahy16g2538 336 Gene3D - 3 330 - -
Ahy16g2538 336 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 315 IPR020829 GO:0016620
Ahy16g2538 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 169 IPR036291 -
Ahy16g2538 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 IPR020831 GO:0016620
Ahy16g2538 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 IPR020831 GO:0016620
Ahy16g2538 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 IPR020831 GO:0016620
Ahy16g2538 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 IPR020831 GO:0016620
Ahy16g2538 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 IPR020831 GO:0016620
Ahy16g2538 336 PIRSF GAPDH 1 336 IPR020831 GO:0016620
Ahy16g2538 336 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 335 - -
Ahy16g2538 336 Gene3D Dihydrodipicolinate Reductase; domain 2 152 317 - -
Ahy16g2538 336 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 327 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Ahy16g2538 336 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 335 IPR020831 GO:0016620
Ahy16g2538 336 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 152 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2538 Ahy-Chr16 135285081 135289093 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2538 K00134 - gmx:100794095 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2538 16 135285081 135289093 Ahy18g2992 18 135055749 135058904 ECH
Ahy16g2538 16 135285081 135289093 Ahy16g2538 16 135285081 135289093 ECH