Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2514 ATGGTTATGGATAAGCTAAGCCAATATGAACGTGTGTTCAACCACTTCGATGAGAATGGAGACGGCAAGATATCGGCATCGGAGCTGAAGCAATGCGTGGAGGCCGTGGGTGGGGAGTTGTCGACCGAGGAGGCAGAGGTGGCCGTGACATTACTGGATTTGGACGGGGATGGGCTTCTGGGACTCGATGATTTTGTGAGGTTTGTGGAAGGAGGAGAAGAGGAAGAGAAAGTGAATGATTTAAGAGAGGCTTTTAAGATGTATGAGATGGATGGGAGTGGTTGCATCACACCAAAGAGCCTTAAGAGGATGCTTAGCAGGTTAGGTGAGTCTAGGTCTATAGATGATTGTAAATTTATGATATCTAGATTCGATCTCAATGGAGATGGAGTTCTTAATTTTGATGAATTCAGGGTCATGATGTTGTAA 429 0.4522 MVMDKLSQYERVFNHFDENGDGKISASELKQCVEAVGGELSTEEAEVAVTLLDLDGDGLLGLDDFVRFVEGGEEEEKVNDLREAFKMYEMDGSGCITPKSLKRMLSRLGESRSIDDCKFMISRFDLNGDGVLNFDEFRVMML* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2514 142 SMART efh_1 44 72 IPR002048 GO:0005509
Ahy16g2514 142 SMART efh_1 116 142 IPR002048 GO:0005509
Ahy16g2514 142 SMART efh_1 80 108 IPR002048 GO:0005509
Ahy16g2514 142 SMART efh_1 8 36 IPR002048 GO:0005509
Ahy16g2514 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Ahy16g2514 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Ahy16g2514 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Ahy16g2514 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 142 - -
Ahy16g2514 142 Gene3D - 3 73 - -
Ahy16g2514 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Ahy16g2514 142 CDD EFh 80 141 IPR002048 GO:0005509
Ahy16g2514 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Ahy16g2514 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Ahy16g2514 142 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 142 - -
Ahy16g2514 142 SUPERFAMILY EF-hand 5 141 IPR011992 -
Ahy16g2514 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Ahy16g2514 142 Pfam EF-hand domain pair 8 69 IPR002048 GO:0005509
Ahy16g2514 142 Pfam EF-hand domain pair 79 141 IPR002048 GO:0005509
Ahy16g2514 142 Gene3D - 74 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2514 Ahy-Chr16 134776427 134777562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2514 10 141 EF-hand Containing Proteins AT1G76640 55.556 1.09e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2514 K13448 - qsu:111991949 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2514 16 134776427 134777562 Ahy16g2514 16 134776427 134777562 ECH
Ahy16g2514 16 134776427 134777562 Ahy6g2158 6 103157737 103159353 hybridization