Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2509 ATGCACTCAATATATCGTTCTACTGCCAGCGATTCCGCTAGCCTATGTTGTAAGGTTCTGGTATCTAGAAGTTTCTCTTCACAGTTAGTATCTTCTCACTGTGTAGGAGCTAGAGAGTTTTGGCATGAAGAACAATGTCTAGGGCTTACTAAATATGCTGACATTCTCATTGCAAAAGCTAGCAAAGGGAACAGCGACCAAGAAATTCTCCGGTCTCTGTTCAATGATCCAGCTTGTGATGGTATACATCTCTCTCAGAACCTTATTCAAAGGTTACTCCATCGATTTAAAGACGATTGGAGGTCTGCATTGGGGATATTCAAATGGGCCGGTTTGCGATCAGGCTTTAGACACTCGCCGGAATCGTATGATATGATGATAGACATATTAGGGAAAATGAAGCAAATGGAAAAGTTGAGAGATTTCTTGGAAGAAATGCATGAGGTGGGTCTTGTTACTCTGAATACTATAGCTAAGGTGATGAGGAGGTTTGTTGGTGCAGGACAGTGGGAAGATGCAGTAAGGATATTTGATAGCTTAGAATCTCTTGGGTTGGAGAAGAACACCGAATCCATGAACTTGTTGCTTGATACGCTATGCAAAGAGGAATTTGTTGAACAAGCTCGTGAAATTTTCTTGGAGCTAAAGCAGCACATTGCTCCAAATGCTTATACGTTTAACATACTTATACACGGCTGGTGCAAAGTCCGTCGTGTGGACGAGGCACAGTGGACAATCCAAGAGATGAAAGGACATGGTTGTCACCCTTGTGTTATAAGTTACTCAACCATCATCCAATGCTATTGCCAAGAACAGAATTTTGACAGGGTCTACGAGCTGCTTGATGAAATGCAAGCACATGGTTGCTCCCCAAATGTGGTCACTTATACTACCATCATGTCTGCATTGGCGAAGGCAGAAAAATTTGAGGAAGCTTTGCAATTAGTTGAGAGAATGAGGTCTGTTGGATGCAAACCTGATACCTTATTCTATAATTCATTCATTTACACATTAGGGAGAGCAGGCAAAGTAGATGATGCTACGTTTGTATTCAAGGTGACGATGCCTAATGATGGTGTTGTCCCAAATACATCCACCTATAATTCAATGATTTCTATGTTCTGTCATTATGCACAAGAGAATAGGGCTTTTGACACATTGCGGGAGATGCAAGATGCGGGCCTCTGTAAGCCTGATCTTCAAACTTACCACCCAATGATCAAATTATGCTTTAAAACGGGAAAAATAGATAGTTGGTTGAAGGATATATTGAATGACATGGTCAACAAACATCATCTTGGTCTTGATATCTCTACCTATACACTTCTAATTCATGGGCTCTGTAGAGCAGATAGATACAAGTGGGCATACTCTTTATTTGAGGACATGATTGATCAAGATGTAATGCCTAGATTGAAAACTTGTCGTTTGCTATTGGAAGAAGTCAAACAGAAAAATATGTATGAAGCCTCCGAGAAAATTGAGGACCTTATGAAGAAAATGTTTTCAAATATGGTTTCTCCAATGATTGCTGAGGTTAGCGAAACATAA 1551 0.4036 MHSIYRSTASDSASLCCKVLVSRSFSSQLVSSHCVGAREFWHEEQCLGLTKYADILIAKASKGNSDQEILRSLFNDPACDGIHLSQNLIQRLLHRFKDDWRSALGIFKWAGLRSGFRHSPESYDMMIDILGKMKQMEKLRDFLEEMHEVGLVTLNTIAKVMRRFVGAGQWEDAVRIFDSLESLGLEKNTESMNLLLDTLCKEEFVEQAREIFLELKQHIAPNAYTFNILIHGWCKVRRVDEAQWTIQEMKGHGCHPCVISYSTIIQCYCQEQNFDRVYELLDEMQAHGCSPNVVTYTTIMSALAKAEKFEEALQLVERMRSVGCKPDTLFYNSFIYTLGRAGKVDDATFVFKVTMPNDGVVPNTSTYNSMISMFCHYAQENRAFDTLREMQDAGLCKPDLQTYHPMIKLCFKTGKIDSWLKDILNDMVNKHHLGLDISTYTLLIHGLCRADRYKWAYSLFEDMIDQDVMPRLKTCRLLLEEVKQKNMYEASEKIEDLMKKMFSNMVSPMIAEVSET* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2509 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Ahy16g2509 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Ahy16g2509 516 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 19 501 - -
Ahy16g2509 516 Coils Coil 299 319 - -
Ahy16g2509 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Ahy16g2509 516 PANTHER OS02G0601600 PROTEIN 19 501 - -
Ahy16g2509 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Ahy16g2509 516 Pfam PPR repeat 436 463 IPR002885 -
Ahy16g2509 516 Gene3D Tetratricopeptide repeat domain 286 354 IPR011990 GO:0005515
Ahy16g2509 516 Gene3D Tetratricopeptide repeat domain 81 217 IPR011990 GO:0005515
Ahy16g2509 516 Gene3D Tetratricopeptide repeat domain 218 285 IPR011990 GO:0005515
Ahy16g2509 516 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Ahy16g2509 516 TIGRFAM PPR: pentatricopeptide repeat domain 259 293 IPR002885 -
Ahy16g2509 516 TIGRFAM PPR: pentatricopeptide repeat domain 439 470 IPR002885 -
Ahy16g2509 516 TIGRFAM PPR: pentatricopeptide repeat domain 224 256 IPR002885 -
Ahy16g2509 516 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Ahy16g2509 516 TIGRFAM PPR: pentatricopeptide repeat domain 122 152 IPR002885 -
Ahy16g2509 516 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Ahy16g2509 516 Pfam PPR repeat 122 150 IPR002885 -
Ahy16g2509 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 362 IPR002885 -
Ahy16g2509 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Ahy16g2509 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Ahy16g2509 516 Pfam PPR repeat family 187 235 IPR002885 -
Ahy16g2509 516 Pfam PPR repeat family 362 410 IPR002885 -
Ahy16g2509 516 Pfam PPR repeat family 256 305 IPR002885 -
Ahy16g2509 516 Gene3D Tetratricopeptide repeat domain 355 515 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2509 Ahy-Chr16 134612087 134616549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2509 195 511 Miscellaneous Gene Families AT4G11690 27.414 1.41e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2509 - - adu:107494799 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2509 16 134612087 134616549 Ahy6g2154 6 103066021 103068111 hybridization