Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2311 ATGGGTTATTATTCTTTGTGGAGTGTTTGTTGTGTGATATTGGCATGGTTTGTTTCAGTTGGAATATGCAGCACACCAAGGAGACCCATGGCGGTTCCATTTGGAAGAAACTATGTTCCAACTTGGGCTTATGATCACATCAAATACTTGAATTCTGGTTATGATGCTCAGCTTCTTCTTGACAAGTACACTGGTACTGGGTTCCAATCCAAAGGTTCATACTTGTTTGGTCACTTCAGCATGGATATAAAGATGGTTGCTGGAGATTCTGCTGGAACAGTAACTGCTTTCTACTTATCTTCCCTAGGGACAGAGCATGATGAGATAGACTTTGAGTTCTTAGGTAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTATTCACCGGTGGCAAAGGCGATAGAGAACAAAGAATCTATCTCTGGTTTGATCCTACCAAAGAATACCACAGATATTCAGTTCTATGGAACTTGTATCAAATTGTATTCTTTGTGGACAACATCCCAATTAGGGTGTTCAAGAACAACAAGCGCATGGGTGTGAAATTCCCATTTAACCAACCAATGAAGATCTACAACAGCCTATGGAACGCAGATGATTGGGCCACAAGGGGTGGTTTGGAGAAAACAGATTGGTCGAAAGCACCATTCATAGCTTCCTACAAAGGCTTCCACATTGATGGCTGTGAAACCTCCGTTGAAGCCAAGTTCTGTTCCACTCAAGGTAAGAGATGGTGGGACCAACAAGAATTCAGAGACCTTGATTCTTATCAATGGAGGAGGCTTAGATGGGTCAGAAGGAGATTCACCATTTATAATTATTGCAGTGATAGAACAAGGTACCCTCAGATGCCACCTGAATGCAGAACAAACGGTGACTATTGA 888 0.4178 MGYYSLWSVCCVILAWFVSVGICSTPRRPMAVPFGRNYVPTWAYDHIKYLNSGYDAQLLLDKYTGTGFQSKGSYLFGHFSMDIKMVAGDSAGTVTAFYLSSLGTEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSVLWNLYQIVFFVDNIPIRVFKNNKRMGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCETSVEAKFCSTQGKRWWDQQEFRDLDSYQWRRLRWVRRRFTIYNYCSDRTRYPQMPPECRTNGDY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2311 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 108 118 IPR008263 GO:0004553|GO:0005975
Ahy16g2311 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 291 - -
Ahy16g2311 295 Gene3D - 20 295 - -
Ahy16g2311 295 PIRSF EndGlu_transf 2 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ahy16g2311 295 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Ahy16g2311 295 CDD GH16_XET 31 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ahy16g2311 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 222 IPR000757 GO:0004553|GO:0005975
Ahy16g2311 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ahy16g2311 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 292 IPR013320 -
Ahy16g2311 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 291 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2311 Ahy-Chr16 127809651 127812303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2311 6 294 Glycoside Hydrolase AT5G13870 75.433 4.77e-173 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2311 K08235 - gmx:100779122 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2311 16 127809651 127812303 Ahy6g1984 6 97361613 97364692 hybridization