Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2260 ATGAGACCCCCGAGAGGTGGCGGAAGAGGAGGCGGTTTTCGAGGTGGCCGTGACGGAGGAGGACGAGGCAGAGGCGGAGGCGGCAGAGGTTTTGGCGGCCGCGGTGGTGGCGGGTTTCGTGATGAAGGTCCTCCCACTGAAGTCGTAGAGGTTTCAACATTTATGCATGCTTGTGAGGGTGATGCAGTGACAAAACTAACGAACGAGAAGATTCCCTTTTTTAATGCTCCTATATACTTGCAAAACATGACTCAGATTGGGAAAGTTGATGAAATATTTGGCCCCATTAATGAATCTTACTTTTCAATCAAAATGATGGAAGGGATTGTTGCTACTTCGTATGCAGCTGGTGACAAGTTTTACATTGACCCGAGGAAACTTTTGCCTCTTGCAAGATTTCTCCCACAGCCAAAGGGGCAATCACAGGGTGGTAGAGGTGGAGGTGGAGGAGGTCGTGGTGGAGGCAGAGGTGGTGGCTTTCGCGGAGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGGGGCGGTGGTAGAGGTGGACCTCCTAGGGGAAGAGGTGGTTTCAGGGGAAGGGGAGGTAGATTTTAG 585 0.5248 MRPPRGGGRGGGFRGGRDGGGRGRGGGGRGFGGRGGGGFRDEGPPTEVVEVSTFMHACEGDAVTKLTNEKIPFFNAPIYLQNMTQIGKVDEIFGPINESYFSIKMMEGIVATSYAAGDKFYIDPRKLLPLARFLPQPKGQSQGGRGGGGGGRGGGRGGGFRGGGGFRGRGGPRGGGRGGPPRGRGGFRGRGGRF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2260 194 Gene3D Probable tRNA pseudouridine synthase domain 44 135 IPR038664 -
Ahy16g2260 194 MobiDBLite consensus disorder prediction 135 194 - -
Ahy16g2260 194 PANTHER NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 1 191 - -
Ahy16g2260 194 SUPERFAMILY Translation proteins 49 123 IPR009000 -
Ahy16g2260 194 Pfam Gar1/Naf1 RNA binding region 48 134 IPR007504 GO:0001522|GO:0042254
Ahy16g2260 194 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1 191 - -
Ahy16g2260 194 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2260 Ahy-Chr16 125309488 125311501 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2260 K11128 - gmx:100788981 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2260 16 125309488 125311501 Ahy16g2260 16 125309488 125311501 ECH
Ahy16g2260 16 125309488 125311501 Ahy6g1932 6 94521285 94523208 hybridization