Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2243 ATGAGAGAGGTAATAAGTATTCATATTGGACAAGCTGGAATTCAGGTTGGGAATTCATGTTGGGAGCTCTATTGCCTTGAGCATGAAATTCAACCTGATGGCATGATGCCAAGTGATACCTCGCTTGGTGTCGCGACAGATTCTTTTAACACGTTCTTCAGCGAGACGGGATCAGGAAAGCACGTGCCGAGGGCTATATTCGTCGACTTAGAGCCTAGTGTGATTGATGAAGTAAGAACTGGTCATTACAGACAACTCTTCCACCCTGAGCAATTAATATCTGGCAAAGAAGATGCTGCTAACAATTTTGCCAGAGGACATTACACTGTTGGAAGAGAGATTATCGAGCTATGCCTCGATCGAGTTAGAAAATTGGCAGATAATTGCACCGGTTTGCAAGGATTCTTGGTTTTTAATGCTGTTGGTGGAGGCACTGGCTCTGGTCTTGGATCGTTGCTTTTGGAACGATTATCTGTGGATTATGGAAAGAAATCTAAACTTGGATTCACTATCTACCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAACCTTACAACAGTGTCCTTTCCACTCACTCCCTTCTGGAGCACACTGATGTGGTTGTGCTTTTAGACAATGAAGCAATATATGACATCTGCAGAAGATCATTAGACATTGAAAGGCCAACTTACACCAACTTGAACCGTCTCATTTCTCAAATCATCTCATCCTTAACCACTTCCTTGAGATTCGACGGTGCGATCAATGTGGACGTTACTGAGTTCCAAACTAACCTTGTGCCGTATCCTCGAATCCATTTTATGCTCTCATCCTATGCACCTGTCATTTCGGCTTCTAAGGCATTCCATGAGCAGCTATCGGTTCCTGAGATCACCAGTGCTGTTTTTGAGCCGTCAAACATGATGGCTAAGTGTGATCCTAGACATGGCAAGTACATGGCTTGCTGCCTCATGTATCGCGGCGATGTTGTGCCAAAAGATGTAAATGCAGCTGTTTCAAATATCAAGACAAAGCGAACAATTCAGTTTGTTGACTGGTGTCCTACTGGTTTCAAGTGTGGAATCAACTACCAGCCTCCAACAGTTGTACCAGGAGGTGATCTTGCGAAGGTGCAGCGAGCAGTTTGTATGATAAGCAACAACACGGCTGTGGCCGAGGTTTTCTCTCGTATCGACTACAAATTTGATCTCATGTATGCTAAGCGTGCATTCGTCCACTGGTATGTTGGTGAAGGAATGGAAGAAGGTGAGTTCTCAGAAGCCAGGGAGGATCTTGCTGCACTCGAAAAGGACTACGAAGAAGTTGCAGCAGAAGAGAACGAAGACGAAGAAAGCGGCCAAGAAGGTTACTGA 1353 0.4472 MREVISIHIGQAGIQVGNSCWELYCLEHEIQPDGMMPSDTSLGVATDSFNTFFSETGSGKHVPRAIFVDLEPSVIDEVRTGHYRQLFHPEQLISGKEDAANNFARGHYTVGREIIELCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISASKAFHEQLSVPEITSAVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVSNIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVAAEENEDEESGQEGY* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2243 450 PANTHER TUBULIN 1 446 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 CDD alpha_tubulin 2 435 - -
Ahy16g2243 450 Coils Coil 418 445 - -
Ahy16g2243 450 Gene3D - 269 383 IPR037103 -
Ahy16g2243 450 PRINTS Alpha-tubulin signature 88 101 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 360 379 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 422 438 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 214 226 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 148 160 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 321 342 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 385 401 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 274 289 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 161 172 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 120 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Alpha-tubulin signature 347 360 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 380 408 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Ahy16g2243 450 PANTHER TUBULIN ALPHA CHAIN 1 446 - -
Ahy16g2243 450 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Ahy16g2243 450 Gene3D Tubulin/FtsZ, GTPase domain 1 268 IPR036525 -
Ahy16g2243 450 Gene3D Helix hairpin bin 384 436 IPR023123 -
Ahy16g2243 450 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Ahy16g2243 450 Pfam Tubulin C-terminal domain 263 392 IPR018316 -
Ahy16g2243 450 SUPERFAMILY Tubulin C-terminal domain-like 246 435 IPR008280 -
Ahy16g2243 450 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Ahy16g2243 450 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Ahy16g2243 450 SMART Tubulin_C_4 248 393 IPR018316 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2243 Ahy-Chr16 124481220 124484999 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2243 K07374 - gmx:100796371 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2243 16 124481220 124484999 Ahy16g2243 16 124481220 124484999 ECH
Ahy16g2243 16 124481220 124484999 Ahy6g1914 6 93779226 93782884 hybridization
Ahy16g2243 16 124481220 124484999 Ahy20g3042 20 141132804 141137887 PCT
Ahy16g2243 16 124481220 124484999 Ahy10g2479 10 114363800 114368623 PCT
Ahy20g3042 20 141132804 141137887 Ahy16g2243 16 124481220 124484999 PCT
Ahy10g2479 10 114363800 114368623 Ahy16g2243 16 124481220 124484999 PCT