Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2088 ATGGCCACTGTCTTTAGAACCCCCATTCTCCGGCCACCTATCCTGCCGCCGCGCTCCTCCTCCTCTTCTGCCGCCGCCGCCACCAAGCCCTCATGCGTTGCCTTTCCCTCTTTCAGACAAACTGCTACCCGCAGAAGGACCACTCTGCCCCTCACCACTTTGCGGTTCCCTTCAATTCCTTCCCTGCGCTTCACGAAGTTCGCCCCTTTCGCTTTCGAAGGAGACACCGAGGCCTCGCCTCAAGTTCAAGAGCCTGAGGTTCAGCTTGAGGATGGTGCTGTTGATGTAGAGGACAGTGCTAGCCATAATGAGGTTAGTGAGGCTGATGAAAGTGAGGAATCTTCACCCTTGCAAGAGTTACTGCAATCTTACAAAGAAGCGGTAGCTAATAATAATGAAGCCATAGTTGCTGAGCTGGAATCATATTTGAAGTCCATTGAAGATGAGAAAATAGGTCTTGAAAGGAAAATAGCTTCGATATCTGCAGAGTTATCAATAGAGAAGGATAGGATTCTAAGGATTAGTGCAGACTTTGACAATTTCCGGAAGAGAACCGAGAGAGATCGCCTTTCTCTGGTCACTAATGCACAGGGGGAAGTTATGGAGAGCTTGTTGCCTGTATTGGATAATTTTGAGAGAGCAAAAACTCAGATCAAGGTGGAGACAGAAGGAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAACAGTTCATGGAAATTCTTACTGCACTTGGAGTTGAACCAGTTAAGACAGTTGGAAAACCCTTTGATCCATTGCTACATGAAGCAATTATGCGCGAGGATTCAACTGAGTTTGAGGATGACATCATAATCCAAGAATTCAGGAAAGGTTTTAAACTTGGTGACCGACTTTTGCGACCATCAATGGTGAAGGTATCAGCTGGTCCGGGACCTGCAAAGCCTGAGCAAGCACAGCAAGAGGAGCAAGTCGCAAGTGAAAATTCTGAGGCTCTTAAAGAAAACAATGGTAGCACAGAAACAGAGTCTTCTTGA 1020 0.4637 MATVFRTPILRPPILPPRSSSSSAAAATKPSCVAFPSFRQTATRRRTTLPLTTLRFPSIPSLRFTKFAPFAFEGDTEASPQVQEPEVQLEDGAVDVEDSASHNEVSEADESEESSPLQELLQSYKEAVANNNEAIVAELESYLKSIEDEKIGLERKIASISAELSIEKDRILRISADFDNFRKRTERDRLSLVTNAQGEVMESLLPVLDNFERAKTQIKVETEGEEKINNSYQSIYKQFMEILTALGVEPVKTVGKPFDPLLHEAIMREDSTEFEDDIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQAQQEEQVASENSEALKENNGSTETESS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2088 339 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 153 247 IPR013805 -
Ahy16g2088 339 PRINTS GrpE protein signature 172 188 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy16g2088 339 PRINTS GrpE protein signature 200 215 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy16g2088 339 PRINTS GrpE protein signature 255 270 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy16g2088 339 PRINTS GrpE protein signature 282 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy16g2088 339 Gene3D Head domain of nucleotide exchange factor GrpE 247 302 IPR009012 GO:0006457
Ahy16g2088 339 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 248 304 IPR009012 GO:0006457
Ahy16g2088 339 PANTHER GRPE PROTEIN HOMOLOG 23 319 - -
Ahy16g2088 339 CDD GrpE 168 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy16g2088 339 Hamap Protein GrpE [grpE]. 97 303 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy16g2088 339 MobiDBLite consensus disorder prediction 314 339 - -
Ahy16g2088 339 MobiDBLite consensus disorder prediction 97 117 - -
Ahy16g2088 339 PANTHER GRPE PROTEIN 23 319 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy16g2088 339 MobiDBLite consensus disorder prediction 300 339 - -
Ahy16g2088 339 Gene3D - 91 245 IPR013805 -
Ahy16g2088 339 Coils Coil 136 163 - -
Ahy16g2088 339 Pfam GrpE 147 302 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ahy16g2088 339 ProSitePatterns grpE protein signature. 258 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2088 Ahy-Chr16 116431300 116434522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2088 K03687 - gmx:100820521 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2088 16 116431300 116434522 Ahy6g1795 6 87655788 87660711 hybridization