Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2008 ATGGCCAAGGCCGTCGTCTCTGACGAAGAAGATGAGGTCGAGTACGAGGAGGAAGAGAGGGACCCCGCTGATGGAGATGGTTTGGAAGACGGTCGGGATGTGGACGATGACGATGAGGAAGATGAAGAAGAAGGGCAGGATGAATATGAAAATGATGGATTTATAGTGGATGATGTTGAAGATGAAGATGAGCAAGATGAAGAAGAGAGGCCAGAAAGTGATGATGAGCGGCAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAGTTGTTGGAGGATAATAACATCAATATTCATCGTCGGAAGGAGAGCAAAAAGTTCAAACGGCTGAAAAAAGGTCGGAGGGATACCGAGGAGGAGCCCTCTGGATTATCTGGTGAAGAGTTTGATGGGAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACCTGAAGACATTGTTGAAGAAGAGGAACAAGGAGAGGAGGAGGAGGAGGATGCAGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGACGTAATGGATGAGAATGGAGATCTTGTGAGACGAAGGAAGCTGAAGAGAAAGAAAACTAGGCAGGCACCAGGTGTCTCTTCATCAGCTTTGCAAGAAGCACAAGAGTTATTTGGTGATGTGGAAGAATTGTTGCAGAACCGCAAGCACAAACTGGAATCGAATGAATATAGAGAAACTAGACTTGAGGATGAATTTGAGCCTATTGTCCTTTCAGAGAAGTATATGACAGAGAAAGATGACCAGATAAGGGAGCTAGACATTCCGGAGAGAATGCAGATATCTGAGGAGAGTACCGGTGCTCCTCCTATGGATGGAGGTATTTTAGAAGAGGAGAGCCAATGGATAGTTAGCCAACTTGGCAATGGTGCAGTCCCTTGGATTTCCAAGAAAATCACAAGCAATCAAAATGGGGCTAAGGAACTACCAATTGAGAAGGATGATATTTTAAGATTTTTGGAAATGCATCATGTGCAGAAATTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGAGTGCTTAAGCTTATTAAAAGACCTTGAGCGATCTGAAGATGGTGATGAGAATTGGGATAAGAATAACAAGACACCTACTCTAAAATGGCACAAGGTTCTCTGGGCTCTACAGGATTTGGACAGGAAGTGGTTACTTCTTCAGAAGAGGAAGAGTGCCCTTCAGCAATACTATAGGAAAAGATTTGAAGAAGAGTCACGCCGTGTTTATGAGGAAACACGACTAAACTTGAACCGGCAGTTGTTTGAATCTGTTATGAGATCCCTGAAGGAGGCGGAATCTGAGAGGGAAGTTGACGACGTTGACTCCAAGTTCAACTTGCACTTTCCACCAGGTGAAGTTGGTGTTGATGAAGGCCAATACAAGAGGCCAAAAAGGAAGTCTATGTATAGCACTTTCAGTAAGGCAGGTCTGTGGGAGGTTGCAAGCAGGTTTGGGTGCAGTGCTGAGCAACTTGGGTTATGTCTCTCACTTGTTGCTCTGCATGAGTTGGAGGATCCAAAGGAAACACCAGAGGAGATGGCTTCAAATTTTACATGTACCATGTATGATACCCCTCAAGAAGTACTTAAGTGTGCTAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAGCATGTTCGCACTCACTTTCTTGATCATGCGGTGGTGTCTACCTGTCCTACTGCAGATGGAAATACAACAATAGATTCTTTCCATCAGTTTGCTGGTGTGAAGTGGTTGCGCGAGAAGCCATTGTCCAAGTTTGAGGATGCCCAATGGCTCCTTATACAGAAGGCAGAGGAGGAGAAACTTCTCCAAGTTACTATTAAGCTTCCTGAAGAGTATCTTAATAAGTTAATAGACCAATTTAATGAGTATTATATTAGTGATAGTGTTAGCAGATCTGCTCAGCTGTGGAATGAACAGAGGAAGCTGATATTGAATGATGCAATCTTTCGGTTTCTCTTACCATCTATGGAAAAGGAGGCAAGAGGTGTTTTGTCAAGCAAGGCAAAGAATTGGTTACTTATGGAGTATGGGAAGGCATTGTGGAGTAAGGTTTCTGTGGGGCCTTATCAGCAGAAGGAAAATGATCTTAGCTCTGATGAAGAGGCCGCTCCTAGGGTTATGGCATGTTGTTGGGGCCCTGGCAAACCACAGACAACTTTTGTTATGTTGGATTCTTCAGGAGAAGTGCTAGATGTGCTTTACACTGGGTCTCTTACTTTTAGATCACAGAATGTCAATGACCAACAACGGAAGAAGAATGACCAGGAACGCGTGCTTAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTGGGAGCTGTAAATTTGTCTTGCACTCGTCTAAAGGAAGATATATATGAGGTCATTTTTAAGATGGTAGAGGAAAACCCTCGAGATGTTGGGCATGAAATGGATGGGCTCAGCATTGTGTATGGGGATGAATCTCTTCCCCGTCTTTATGAAAATTCACGAATTTCCTCCGAACAACTTCCTTCCCAACAAGGTATAGTGAGGCGGGCTGTTGCACTTGGTCGATATCTTCAGAACCCATTGGCAATGATTGCAACATTATGTGGACCTAGAAAGGAAGTATTATCATGGAAACTGAGCTCTTTAGAGAGCTTTCTTAACCCAGATGATAAGTTTGCTATGATTGAGCAAGTTTTGGTAGATGTGACTAATCAGGTTGGATTAGATATTAATCTGGCGATAAATCATGAGTGGTTATTTGCACCATTGCAATTTGTTTCCGGGCTTGGTCCACGAAAGGCTGCATCCTTACAGAGATCGTTGGTGAGAGCTGGTGCAATTTTTACTCGGAAAGACTTCCTGACAGAACATAAACTGGGTAAAAAGGTGTTTGTCAATGCAGTTGGGTTTTTGCGTGTACGACGAAGTGGGTTGGCTGCTAGCAGCAGCCAGTTTATTGATTTGCTGGATGATACAAGAATCCATCCAGAATCATATAGTCTTGCTATAGAGTTGGCTAAAGATGTCTATGAGGAGGATGGAACAGGTGATGCAAACGATGATGATGATGCTGAGATGGCCATTGAGCATGTGAGAGACCGGCCTAGCTATTTGAAAAACCTAGACGTCGAGGAATATGCTGCTGGAAAGAAACGCCAGAACAAGATAGAAACTTTCTATGACATAAAAAGAGAACTGATTCAAGGTTTCCAGGAATGGCGTAAGCAATATGAAGAACCAAGCCAGGATGAGGAGTTCTATATGATTTCAGGTGAGACTGAGGAGACTCTGGCGGAAGGTAAAATTGTCCAAGCCACTGTTCGCAGAGTGCAAGCCCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACTGGAATCCTTATGAAAGAAGACTATACTGATGATTGGAGAGACGTAGTTGAACTTTCTGATAGGATACACGAGGGTGACATACTCACGTGTAAAATCAAGTCAATTCAAAAGAATAGGTATCAAGTCTTCCTTGTTTGTAGAGAGAGTGAAATGAGAAGCAACCGTTTTCAAAACAACCGTGATCTTGATCCTTACTACCATGAAGACAGAAGCTCTCTGCAGAGTGATCAAGACAAAGCTCGGAAAGAAAAGGAGCTTGCGAAGAAGCATTTCAAGCCGAGGATGATTGTCCATCCACGCTTTCAAAATATAACTGCTGATGAAGCAATGGAGTTCTTGTCTGACAAAGACCCTGGGGAAAGCATTATTCGTCCTAGTTCACGTGGACCTTCATATCTTACTTTAACGCTCAAAATTCATGATGGAGTGTATGCCCACAAAGATATAGTTGAAGGTGGAAAGGAACATAAGGACATTACAAGCTTGCTTCGAATTGGGAAGACACTCAAAATTGGAGAGGACACTTTCGAGGATTTAGATGAGGTTATGGACCGTTATGTTGATCCCTTGGTGACTCATTTAAAGGCAATGTTAAATTACCGCAAGTTCAGGAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGCTGGAGAAATCTGAGTATCCAATGCGCATTGTCTATAGTTTTGGCATCTCGCATGAACATCCTGGAACATTTATATTAACTTATATAAGAAGTACAAATCCACATCATGAGTACATTGGACTTTATCCAAAAGGATTCAGATTTCGCAAGAAGATGTTTGAGGACATTGATCGGCTTGTGGCGTATTTTCAGAGGCATATTGATGATCCCCAGCATGATTCAGCCCCTTCCATAAGATCTGTGGCTGCTATGGTACCAATGCGAAGCCCTGCGGCTGGTGGTTCATCAGGGGCATCTACAGGTAGTGGCTGGGGAGGTTCAAACAATGAGGGTGGTTGGAAGGGTAACTCCTATGATAGGGATCGATCATCTACTCCTGGTTCCAGGACAGGACGGGGAGATTACAGACACAATAATAGAGATGAACACCCTAGCGGAGTGCCTCGTCCATATGGCGGTGGACGTGGTCGCGGACGCGGACGTGGTCGAGGTTCTTACGATAACAATAGAGGACATGGCTCCAATAATGAAAGGCAGGACTCCGGGTATGGTGGATCTAGATGGAGTTCGGCTAAAAAGGATGCAGATGATTTAAGCAATTTTCCAGGGGCTAAGGTCCAAAATTCTCCTGGAAGAGAAGCTTTCCCTGGTGGTTGGGGGGGAAGTGGTGGAGGTAGCAGCAGTGGTTGGGGAGGTGGAAATAGCGGCGATGACAACGGGGGATGGGGTGGTGGTGCAGGTCCAAGCGACACCGATAATGGAGGCTCCGGCTGGGGAGCTGGCTCTAAGAAAGCATCTGACAATGGATGGTCTGGAAATGCTGGGGGCGGCTCTGGTTGGTGA 4944 0.4419 MAKAVVSDEEDEVEYEEEERDPADGDGLEDGRDVDDDDEEDEEEGQDEYENDGFIVDDVEDEDEQDEEERPESDDERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSGEEFDGSGKVGRTAEEKLKRSLFGDDEGAPPEDIVEEEEQGEEEEEDADIGEDDEMADFIVDEDVMDENGDLVRRRKLKRKKTRQAPGVSSSALQEAQELFGDVEELLQNRKHKLESNEYRETRLEDEFEPIVLSEKYMTEKDDQIRELDIPERMQISEESTGAPPMDGGILEEESQWIVSQLGNGAVPWISKKITSNQNGAKELPIEKDDILRFLEMHHVQKLDIPFIAMYRKEECLSLLKDLERSEDGDENWDKNNKTPTLKWHKVLWALQDLDRKWLLLQKRKSALQQYYRKRFEEESRRVYEETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEVGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSAEQLGLCLSLVALHELEDPKETPEEMASNFTCTMYDTPQEVLKCARHMAAVEISCEPSIRKHVRTHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFEDAQWLLIQKAEEEKLLQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILNDAIFRFLLPSMEKEARGVLSSKAKNWLLMEYGKALWSKVSVGPYQQKENDLSSDEEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMIATLCGPRKEVLSWKLSSLESFLNPDDKFAMIEQVLVDVTNQVGLDINLAINHEWLFAPLQFVSGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYSLAIELAKDVYEEDGTGDANDDDDAEMAIEHVRDRPSYLKNLDVEEYAAGKKRQNKIETFYDIKRELIQGFQEWRKQYEEPSQDEEFYMISGETEETLAEGKIVQATVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVVELSDRIHEGDILTCKIKSIQKNRYQVFLVCRESEMRSNRFQNNRDLDPYYHEDRSSLQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKIHDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKAEVDELLRLEKSEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGASTGSGWGGSNNEGGWKGNSYDRDRSSTPGSRTGRGDYRHNNRDEHPSGVPRPYGGGRGRGRGRGRGSYDNNRGHGSNNERQDSGYGGSRWSSAKKDADDLSNFPGAKVQNSPGREAFPGGWGGSGGGSSSGWGGGNSGDDNGGWGGGAGPSDTDNGGSGWGAGSKKASDNGWSGNAGGGSGW* 1648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2008 1647 Pfam HHH domain 1015 1094 IPR041692 -
Ahy16g2008 1647 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1595 - -
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 141 160 - -
Ahy16g2008 1647 SMART rnase_8s 740 858 IPR006641 GO:0006139
Ahy16g2008 1647 SUPERFAMILY RuvA domain 2-like 1014 1102 IPR010994 -
Ahy16g2008 1647 Gene3D SH2 domain 1347 1443 IPR036860 -
Ahy16g2008 1647 Gene3D - 497 933 IPR023323 -
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 1208 1233 - -
Ahy16g2008 1647 SUPERFAMILY Ribonuclease H-like 740 895 IPR012337 -
Ahy16g2008 1647 SUPERFAMILY RuvA domain 2-like 911 1001 IPR010994 -
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 1456 1647 - -
Ahy16g2008 1647 Pfam Helix-hairpin-helix motif 899 1000 IPR032706 -
Ahy16g2008 1647 SUPERFAMILY Nucleic acid-binding proteins 1122 1202 IPR012340 -
Ahy16g2008 1647 Gene3D - 1009 1100 IPR042066 -
Ahy16g2008 1647 ProSiteProfiles S1 domain profile. 1127 1198 IPR003029 GO:0003676
Ahy16g2008 1647 Pfam Holliday-junction resolvase-like of SPT6 739 895 IPR028231 -
Ahy16g2008 1647 SUPERFAMILY Tex N-terminal region-like 333 718 - -
Ahy16g2008 1647 Gene3D - 730 1119 IPR037027 GO:0006139
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 1535 1553 - -
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 1633 1647 - -
Ahy16g2008 1647 Pfam SH2 domain 1216 1433 IPR035420 -
Ahy16g2008 1647 Gene3D - 1120 1208 IPR012340 -
Ahy16g2008 1647 CDD SH2_Nterm_SPT6_like 1249 1337 IPR035019 -
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 1460 1499 - -
Ahy16g2008 1647 Gene3D - 262 1003 - -
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 1 198 - -
Ahy16g2008 1647 SMART S1_6 1125 1198 IPR022967 -
Ahy16g2008 1647 Pfam Acidic N-terminal SPT6 35 124 IPR028083 -
Ahy16g2008 1647 Gene3D - 295 496 IPR023319 -
Ahy16g2008 1647 Gene3D SH2 domain 1235 1346 IPR036860 -
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 9 71 - -
Ahy16g2008 1647 CDD SH2_Cterm_SPT6_like 1348 1434 IPR035018 -
Ahy16g2008 1647 PIRSF Spt6 2 1501 IPR017072 GO:0032968
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 162 198 - -
Ahy16g2008 1647 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1595 IPR017072 GO:0032968
Ahy16g2008 1647 SUPERFAMILY SH2 domain 1252 1338 IPR036860 -
Ahy16g2008 1647 MobiDBLite consensus disorder prediction 72 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2008 Ahy-Chr16 111280837 111290548 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2008 K11292 - gmx:100809136 2687.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2008 16 111280837 111290548 Ahy16g2008 16 111280837 111290548 ECH
Ahy16g2008 16 111280837 111290548 Ahy6g1729 6 83554031 83563801 hybridization