Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1939 ATGGGCAACTCTGAGTCTCAGTCAGTTCCAACCGATCCCCGTTTTGTTTCAGCTTCCAGAGCCTTTACTCACCACGAACTTGAAGACTTAAGGTCTCTCTTCGATTCGCTCGCTGCCAAGTCTCAGAGCAATGCCCAATACATCTCTTCCTCTGTTTTTCAGTCATATTTTGGACTCCATGGCCCGCTTGGGGATAGAATTTTCCATTTAGTTACTCAAGAGCGCAAGGATCAGCATTTAACTTTTGAAGACCTCGTTGTTGCTAAGGCTACTTACGAGAAAGGAACAAGAGATGACATTGAAGAATTCATCTTTCGCTTATTGGATGTAAATGGGGATAAATTTGTAGGGAGGTCTGATTTGGAGTCTGTTATGATTTCCATTTTTAAGGATATATTATGCATAAAAGATAATGAAGCTAGATCAAGTTCAGATAAGGGCATTGTCAACATATTTCTAAATGCTGCAAATTTCTCAATGCATGAAGAAGGGTGCACTGAGGAGTCTATGTCTTTTGAGGATTTCAGAAGTTGGTGCACTCATGTCCCATCTGCTAGGAAGCTTCTTGGGAGCTTGCTGATGCCACCTGATTCAGGACGACCAGGTTCTCAAATTCCAAACTTGTTGACCTCAAACGACATTGATCCTAGCATTTTACTTTTGAGAAAGGAATATGCTTGGCATATAGGAGGTGCACTTTCTCAGCACGAGCTGGAAGATTGGATGCTTTTATATCATAGTTCTATTAATGGTCTTAGTTTTAATACATTCTTGGGAAACATTTCAAATCATCAAGGCCCCAGTGTGTTAATTATTAAGGATAAAGAGGGTTATATATATGGAGGATATGCTTCTCAGCCATGGGAACGGCATGCTGATTTTTATGGAGATTTGAAATGTTTCCTTTTTCAACTGAATCCAAAGGCATCCATTTTCCGGCCTACTGGAGCAAACCATAACCTACAATGGTGTGCCATCAATTTCAGTTCGGCAGACATTCCAAATGGCATTGGATTCGGAGGACGAGTTAGTCACTATGGTGTTTTTATCTCGGCAAACTTCGATCAAGGCCATACATTTGCGTGTTCCACATTTGGTAGCCCGTGCCTCTCTAAGACCAACCGCATATTGCCGGAAGTAATAGAGTGCTGGGGAGTGACTCAAGGAACGGTTCTAGGCAAGAATGATGCCGTCAAAGGCACCATACTCGAAAGGTTTAAGGAAGATCGCCACATGCTCAACATGGTTGGGCTAGCGAATTCCAGTGAGTGA 1272 0.423 MGNSESQSVPTDPRFVSASRAFTHHELEDLRSLFDSLAAKSQSNAQYISSSVFQSYFGLHGPLGDRIFHLVTQERKDQHLTFEDLVVAKATYEKGTRDDIEEFIFRLLDVNGDKFVGRSDLESVMISIFKDILCIKDNEARSSSDKGIVNIFLNAANFSMHEEGCTEESMSFEDFRSWCTHVPSARKLLGSLLMPPDSGRPGSQIPNLLTSNDIDPSILLLRKEYAWHIGGALSQHELEDWMLLYHSSINGLSFNTFLGNISNHQGPSVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPKASIFRPTGANHNLQWCAINFSSADIPNGIGFGGRVSHYGVFISANFDQGHTFACSTFGSPCLSKTNRILPEVIECWGVTQGTVLGKNDAVKGTILERFKEDRHMLNMVGLANSSE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1939 423 ProSiteProfiles EF-hand calcium-binding domain profile. 96 131 IPR002048 GO:0005509
Ahy16g1939 423 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 415 - -
Ahy16g1939 423 Gene3D - 1 191 - -
Ahy16g1939 423 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 415 - -
Ahy16g1939 423 ProSiteProfiles TLDc domain profile. 219 387 IPR006571 -
Ahy16g1939 423 ProSitePatterns EF-hand calcium-binding domain. 109 121 IPR018247 -
Ahy16g1939 423 Pfam TLD 243 386 IPR006571 -
Ahy16g1939 423 SUPERFAMILY EF-hand 1 196 IPR011992 -
Ahy16g1939 423 SMART 109ultra 218 387 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1939 Ahy-Chr16 102385140 102389905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1939 104 422 EF-hand Containing Proteins AT5G06260 61.491 1.51e-148 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1939 - - adu:107494057 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1939 16 102385140 102389905 Ahy16g1939 16 102385140 102389905 ECH
Ahy16g1939 16 102385140 102389905 Ahy6g1678 6 77748243 77752973 hybridization