Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1936 ATGGTGCAAATTTTGGGGAACAAGTTAAAGGAAGAACGTGGGAAGGAAAATGAGTATCTGCCAATGCTAGAAGGTAAGGTGGCAATAATCACAGGAGGTGCGGGGGCCATTGGTGCAACCACCGCAAAACTATTCCTTCAACACGGAGCTAAGGTGATCATCGCAGATGTCCAAGACGAACTGGGAATCTCTCTCTGCAAATCCCTCATCACCAAAGAATGTGCCACTAATAACAACAACAACATCGACTACGTTCACTGTGACGTGACCTCCGAACAAGACGTCAAAAACGCGGTCGATTTGGCTGTTTCCAAATACGGCCACCTTGACATCATGTACAACAATGCCGGCACCGCCGGTGACAACATCAAGCGGCCGATGGAGAACTCCACCGTCCAAGACTTCAAGAGAATCTTCGATGTCAACGTCTTAGGGGCTTTCTTGGGCGCCAAGCATGCAGCGAGGGTCATGGTAAAGGCACAGAGGGGAGGCGTTATCCTCTTCACGACGAGCATTACTTCTGTGATCGGAGGCCAGGCAAAACCGGCTTACAGCGCATCCAAGCACGCCTTGGTGGGGCTGATGAAAGATCTGTGCGTGGAACTTGGTCAGCATGGGATTAGAGCGAATTGCATTGCTCCGGGGGGGATTGCGACGCCAATGCTGAACGGTTGGTTGAAGATGGAGAGGGAGGGGACGGAGGAGATCCTGCAGTCGGTGGGGGTGCTGAAAGGTGGGGTGGTTAAGGAGGAGGATGTGGCGGAGGCGGCGGTTTATTTGAGCAGCGACGAGGGGAGGTTCATAAGTGGAGTAAACCTTGTGGTGGATGGGGGTTATAGCTCAACCAATGCGTCATTCGCTATGATAGCGAACGTTCTCAAAAACAACCAAACCACCAATTGCATTGATGCCTAA 915 0.5169 MVQILGNKLKEERGKENEYLPMLEGKVAIITGGAGAIGATTAKLFLQHGAKVIIADVQDELGISLCKSLITKECATNNNNNIDYVHCDVTSEQDVKNAVDLAVSKYGHLDIMYNNAGTAGDNIKRPMENSTVQDFKRIFDVNVLGAFLGAKHAARVMVKAQRGGVILFTTSITSVIGGQAKPAYSASKHALVGLMKDLCVELGQHGIRANCIAPGGIATPMLNGWLKMEREGTEEILQSVGVLKGGVVKEEDVAEAAVYLSSDEGRFISGVNLVVDGGYSSTNASFAMIANVLKNNQTTNCIDA* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1936 304 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 171 199 IPR020904 GO:0016491
Ahy16g1936 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Ahy16g1936 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Ahy16g1936 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 184 203 IPR002347 -
Ahy16g1936 304 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 22 290 - -
Ahy16g1936 304 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-RELATED 22 290 - -
Ahy16g1936 304 Gene3D - 4 301 - -
Ahy16g1936 304 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 280 IPR036291 -
Ahy16g1936 304 Pfam Enoyl-(Acyl carrier protein) reductase 34 280 - -
Ahy16g1936 304 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Ahy16g1936 304 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Ahy16g1936 304 PRINTS Glucose/ribitol dehydrogenase family signature 205 222 IPR002347 -
Ahy16g1936 304 PRINTS Glucose/ribitol dehydrogenase family signature 27 44 IPR002347 -
Ahy16g1936 304 PRINTS Glucose/ribitol dehydrogenase family signature 184 203 IPR002347 -
Ahy16g1936 304 PRINTS Glucose/ribitol dehydrogenase family signature 243 263 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1936 Ahy-Chr16 102273292 102275861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1936 15 278 Acyl Lipid Metabolism Gene Families AT1G63380 26.937 6.66e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1936 - - aprc:113863381 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1936 16 102273292 102275861 Ahy16g1936 16 102273292 102275861 ECH
Ahy16g1936 16 102273292 102275861 Ahy6g1677 6 77656174 77657829 hybridization