Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1935 ATGGCAGGATCATCCACCTCTGCAATAAACAGAAGGCTGGAAGGAAAAGTGGCATTAATAACTGGAGGAGCAAGCGGAATAGGCAAACGCACGGCGGAAATATTCGCAGAGCACGGAGCCAAAGTAGTGATCGCAGATGTCCAAGACGAACTAGGCCACGCGGTTGTCCAATCCATAGGACCATCCACATGCACCTTCGTCCACTGCGACGTCACCGACGAGGACCAAGTCAAGCGCGCCGTCAACACCGCCATCGAAGCATACGGCAAGCTAGACATCATGTTCAACAACGCCGGCATAGCAGACCCCAACAAGGCCCGAATAATCGACAACCACAAGGCCGATTTCGAGCGCGTCCTCAGCGTCAACGTAACCGGAGTTTTCTTGGGGATCAAGCATGCCTCGCAGCCCATGATCAAGGCCGGTGGCGGCAGCATAATCTCGACGGCTAGCGTCAGCTCGTACGTGGGCGGCGCCGCCTCCCACGCCTACTGCTGCGCTAAGCACGCGGTGGTTGGGCTGACCAAGAATGCGGCGGTGGAGCTCGGACAGTTTGGGATCAGAGTGAATTGCTTGTCGCCTTACGCTCTTGCGACTCCTTTGGCTACCACGTTCGTCGGGGTGAACGATGAGGAGCTTGAGAATGTGATGAACTCGCTCGCGAATCTTAAAGGTGTTACCCTTAAAACTGATGACGTGGCCAATGCTGCGCTTTATTTTGCTAGCGATGATTCCAGGTATGTCAGTGGACAGAACTTGCTCGTTGACGGTGGCTTCAGCATTGTTAACCCCTCCTTTCACATGTTTCAGTATCCACAAGACACTTAG 828 0.5423 MAGSSTSAINRRLEGKVALITGGASGIGKRTAEIFAEHGAKVVIADVQDELGHAVVQSIGPSTCTFVHCDVTDEDQVKRAVNTAIEAYGKLDIMFNNAGIADPNKARIIDNHKADFERVLSVNVTGVFLGIKHASQPMIKAGGGSIISTASVSSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATTFVGVNDEELENVMNSLANLKGVTLKTDDVANAALYFASDDSRYVSGQNLLVDGGFSIVNPSFHMFQYPQDT* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1935 275 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 6 271 - -
Ahy16g1935 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 262 IPR036291 -
Ahy16g1935 275 Gene3D - 3 270 - -
Ahy16g1935 275 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 6 271 - -
Ahy16g1935 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Ahy16g1935 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Ahy16g1935 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Ahy16g1935 275 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Ahy16g1935 275 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Ahy16g1935 275 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Ahy16g1935 275 PRINTS Glucose/ribitol dehydrogenase family signature 17 34 IPR002347 -
Ahy16g1935 275 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Ahy16g1935 275 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Ahy16g1935 275 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Ahy16g1935 275 Pfam Enoyl-(Acyl carrier protein) reductase 22 260 - -
Ahy16g1935 275 CDD secoisolariciresinol-DH_like_SDR_c 12 260 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1935 Ahy-Chr16 102253546 102272184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1935 13 269 Acyl Lipid Metabolism Gene Families AT1G62610 30.712 3.75e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1935 - - gmx:100802915 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1935 16 102253546 102272184 Ahy16g1935 16 102253546 102272184 ECH
Ahy16g1935 16 102253546 102272184 Ahy6g1676 6 77654306 77655184 hybridization