Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1911 ATGGATTCAATAGAAGTAGAGTTGAGCATTGAAAGCCAATCAGATAAAATGCAAGCAGCGGGCGTTCACAGCTACGTTGCAGAGTGGCCAATTTCCTGTCTAGCATGGTCAGTCCGCCGTGACAAAGCCCCGCGCCTGGCCATAGGCAGCTACTTGGAAGACTACACAAACAAAGTCGAACTCATTCACTTCAACTACCACACCTTCAACTTCACCACCGATCCTCGTTTGGTGCTGGACCACCCATACGCCCCAACCAACCTCATGTTCTTCCCCTCCGACAACGATACCAACCCCGACCTCCTCGCCACTTCCGGCGACAACCTCAGACTCTGGCAAATTCACCACGACCACATTCAACTCAAGTCCCTCTTAATTGGTAACAAAGTCAGTGACCACTCCGCAATAACGTCGTTTGACTGGGCAGGGTTCGATCCTCGTCTTGTGGCCACTTCTAGCGTCGACACCACGTGCACCATTTGGGACATTGAAAGGGAATCCATGAATGCGCAGCTTGTGGCGCACGATAAAGAGGTGTATGATATTTCATGGGGTGGGCTTAACGTCTTTGCTTCTGTCTCTGGTGATGGTTCTGTTAGGGTGTTTGATCTGAGAGACAAGGAGAAATCGACCATCATTTATGAGAATCCGGTTCAAGATTGTCCCTTGTTGCGTCTCGAATGGAACAAAGCGGATCCCAGGTTTATGGCGACGGTTGGAATGAACAGCAGTAAGGTGGTGGTTATGGATATTAGGCAACCAACAACGCCTTTTATGGAGTTAAGTAAGCATAGGATGAGTGTTAATGGTGTATCGTGGTCCCCGGATATCGGACGGCATTTGTGCTCTGTTGGTGATGATTCAACGGCCTTGATTTGGGAGGTGATGGAAACGGGGGTTCAAGGTGGTTGTTGTGATGTAGAGCCCTTGATGTGGTATGGATCAACGGCTGAGATCAATCACGTGTGTTGGTCTCCTATGCAGTGGGACTGGATTGCACTTACTTTCTTAAATAATTTGCAACTACTCAAGGTGTAG 1038 0.4884 MDSIEVELSIESQSDKMQAAGVHSYVAEWPISCLAWSVRRDKAPRLAIGSYLEDYTNKVELIHFNYHTFNFTTDPRLVLDHPYAPTNLMFFPSDNDTNPDLLATSGDNLRLWQIHHDHIQLKSLLIGNKVSDHSAITSFDWAGFDPRLVATSSVDTTCTIWDIERESMNAQLVAHDKEVYDISWGGLNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKADPRFMATVGMNSSKVVVMDIRQPTTPFMELSKHRMSVNGVSWSPDIGRHLCSVGDDSTALIWEVMETGVQGGCCDVEPLMWYGSTAEINHVCWSPMQWDWIALTFLNNLQLLKV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1911 345 Gene3D - 21 341 IPR015943 GO:0005515
Ahy16g1911 345 PANTHER WD REPEAT CONTAINING PROTEIN 13 345 IPR045159 -
Ahy16g1911 345 PANTHER WD REPEAT-CONTAINING PROTEIN LWD1-LIKE 13 345 - -
Ahy16g1911 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 212 IPR001680 GO:0005515
Ahy16g1911 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 295 - -
Ahy16g1911 345 SMART WD40_4 165 203 IPR001680 GO:0005515
Ahy16g1911 345 SMART WD40_4 123 162 IPR001680 GO:0005515
Ahy16g1911 345 SMART WD40_4 254 294 IPR001680 GO:0005515
Ahy16g1911 345 SMART WD40_4 72 113 IPR001680 GO:0005515
Ahy16g1911 345 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Ahy16g1911 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 295 IPR001680 GO:0005515
Ahy16g1911 345 SUPERFAMILY WD40 repeat-like 30 339 IPR036322 GO:0005515
Ahy16g1911 345 Pfam WD domain, G-beta repeat 131 162 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1911 Ahy-Chr16 100434427 100439542 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1911 K11805 - tcc:18598302 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1911 16 100434427 100439542 Ahy16g1911 16 100434427 100439542 ECH
Ahy16g1911 16 100434427 100439542 Ahy6g1659 6 75617982 75622880 hybridization