Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1591 ATGATGAACAGCTCGAACGGCATGATGTCCCCGTCGTCATCGGGAACCGCACAGTCCCCTGGGCTCAAGACTTATTTCAAAACCCCTGAGGGCCGATACAAGCTTCAATACGAGAAGACTCACCCTTCTGGTCTTCTTCATTATGCTCATGGCAAAACCGTTACTCAGGTTACTCTTGCACATCTCAAAGACAAACCTGCGCCTTCGACCCCGACTGCGTCTTCTTCAAGTTTCAGTGCCAGCAGTGGGGTGCGGTCTGCGGCAGCTAGATTGTTGGGAGGAAGCAATGGAAGCCGAGCGCTTAGTTTTGTTGGGGGCAATGGTGGAAGCAAGAGTAATGGAGGAACGAGTAGGATTGGTTCAATTGGTGCCTCCAGTTCAAGTAGTTCGCTGGCTAATCCAAATTTTGACGGCAAAGGAACCTACTTGATCTTCAATGTCGGAGATGCAATTTTCATAAGTGATTTGAATTCTCAAGACAAGGACCCAATAAAGTCTATTCACTTTAGTAACTCAAATCCTGTGTGCCATGCATTTGATCCTGATGCTAAGGATGGACATGATTTGCTTGTTGGCTTGACCTCTGGAGATGTCTACTCAGTATCACTGAGACAGCAATTACAGGATGTTGGCAAAAAGCTTGTTGGGGCTCAGCATTACAACAAAGATGGTACCGTCAGTAACAGTCGTTGTACATGCATTGCTTGGGTGCCAGGAGGTGATGGAGTTTTTGTTGTTGCTCATGCTGATGGAAATTTATTCGTATATGATAAGAATAAAGACAGTGCTGGTGATTCTTCATTCCCAGTTGTTAAAGATCAAACTCAATTTTCTGTTGTGCATGCACGTTATAGTAAGAGTAACCCAATAGCCAGATGGCATATATGCCAGGGTTCAATCAACATGTTTTCTTTCTCATCCGATGGAGCATACTTAGCAACTGTTGGAAGAGATGGCTACTTACGAGTGTTTGATTACATAAAAGAACAACTTATATGTGGTGGAAAGAGTTATTATGGGGCTTTGTTGTGTTGTGCTTGGAGCATGGATGGGAAATATGTTTTGACGGGTGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGATGATCGAAAGATTGTAGCATGGGGTGAGGGACATAACTCATGGGTAAGTGGAGTGGCATTTGATTCATATTGGTCATCGCCAAATTCAAGTGATAATGGAGAGAACGTGATGTATCGATTTGGTTCGGTCGGTCAGGATACTCAATTACTTCTATGGGACCTGGAAATGGATGAGATTGTAGTGCCCTTGAGGCGTCCTCCTGGCGGATCTCCGACTTACAGTACTGGAAGCCAGTCATCCCATTGGGACAGTGTTGTTCCATTGGGTACCTTACAACCTGCTCCAAGTATGCGTGATGTTCCAAAAATCTCCCCATTGGTTGCTCACAGAGTGCACACCGAACCACTCTCTGGCTTGATATTTACTCAGGAATCTGTACTCACTGCCTGCCGGGAGGGGCACATAAAAATCTGGACGAGACCTGGTGTTGCCGAGAGCCAATCAAGCAACTCTGAAAACTTGTTAGCCACCAGCCTTAAGGACAAGCCTTCACTTTCCAGCAAGATTGGAAATTCTAGCTACAAACAATGA 1638 0.4518 MMNSSNGMMSPSSSGTAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGTSRIGSIGASSSSSSLANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDPDAKDGHDLLVGLTSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGTVSNSRCTCIAWVPGGDGVFVVAHADGNLFVYDKNKDSAGDSSFPVVKDQTQFSVVHARYSKSNPIARWHICQGSINMFSFSSDGAYLATVGRDGYLRVFDYIKEQLICGGKSYYGALLCCAWSMDGKYVLTGGEDDLVQVWSMDDRKIVAWGEGHNSWVSGVAFDSYWSSPNSSDNGENVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDSVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWTRPGVAESQSSNSENLLATSLKDKPSLSSKIGNSSYKQ* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1591 545 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Ahy16g1591 545 Pfam WD domain, G-beta repeat 298 325 IPR001680 GO:0005515
Ahy16g1591 545 MobiDBLite consensus disorder prediction 1 25 - -
Ahy16g1591 545 MobiDBLite consensus disorder prediction 515 545 - -
Ahy16g1591 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Ahy16g1591 545 SUPERFAMILY WD40 repeat-like 136 509 IPR036322 GO:0005515
Ahy16g1591 545 SMART WD40_4 471 508 IPR001680 GO:0005515
Ahy16g1591 545 SMART WD40_4 286 325 IPR001680 GO:0005515
Ahy16g1591 545 SMART WD40_4 328 367 IPR001680 GO:0005515
Ahy16g1591 545 SMART WD40_4 219 257 IPR001680 GO:0005515
Ahy16g1591 545 SMART WD40_4 370 422 IPR001680 GO:0005515
Ahy16g1591 545 PANTHER WD REPEAT PROTEIN 3 542 - -
Ahy16g1591 545 Gene3D - 12 517 IPR015943 GO:0005515
Ahy16g1591 545 MobiDBLite consensus disorder prediction 105 131 - -
Ahy16g1591 545 MobiDBLite consensus disorder prediction 1 23 - -
Ahy16g1591 545 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1591 Ahy-Chr16 40383868 40389197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1591 299 429 Miscellaneous Gene Families AT5G08390 22.137 2.21e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1591 K24741 - gmx:100782580 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1591 16 40383868 40389197 Ahy16g1591 16 40383868 40389197 ECH
Ahy16g1591 16 40383868 40389197 Ahy6g1430 6 29435887 29441216 hybridization