Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1416 ATGGAAGGAGAACAACAAAGCAGTGGCATATTGAGGTCCATGGACGCGGAGCAACTCAGAGAGCATGCACATAAGATGGTTGATTTTATTGCTGACTACTACAAAACCATTGAGAGTTTCCCAGTTCTCAGCCAAGTTCAGCCAGGTTATCTTGAAAAGCTCTTACCGGATTCTGCTCCTGATTATCCTGAAACACTGGAGCATGTTTTGAATGATGTACAGGAAAAGATTTTGCCAGGGGTAACACATTGGCAAAGCCCCAATTATTTTGCATATTTTCCTTCCAACAGTAGCATTGCTGGATTTCTTGGAGAAATGCTCAGTGCTGGTTTCAACATTGTCGGTTTCAGCTGGATAACTTCTCCTGCCGCAACAGAACTCGAAACCATTGTTCTCGATTGGCTTGCTAAGGCACTTAAGCTGCCTCATGATTTCCATTCTACTGGGCAAGGTGGTGGAGTTATTCAAGGAACAGCGAGTGAAGCAGTTCTAGTTGTCTTGTTGGCTGCTCGCGACAAGATCTTAAGGACGGTTGGAAAAGGCGCTCTTCCTAAGCTTGTGACATATGCATCTGATCAAACACACTCTTCTCTACTAAAAGCCTGCCAGATAGGTGGACTTAATCCTGAGTTTTGCAGGTCACTAAAAACTGATGCTTCAACAAATTATGCGCTTTCTCCTGAAGTATTTTCTGAAGCAGTTTCAAGGGACATTGCTAGTGGTCTTATACCATTTTTCTTATGTGCTACCGTTGGTACAACTTCATCAACTGCTATTGATCATCTACCTGAATTGGGGAAAATTGCTAAGGTCAAAAACATTTGGTTTCATGTTGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTATCAACACCATCTCAATGGTGTCGACGAAGCAGACTCATTCAACATGAATGCGCATAAATGGCTCTTGACAAACTTTGACTGTTCACTACTTTGGGTTAAGGATAGAAGTGCTCTGATTCAATCACTATCTACGAACCCGGAGTATCTGAAAAACAAGGCCTCTCAAGGAAATATGGTCATAGATTACAAAGATTGGCAAATTCCCCTGGGGCGTCGCTTTAGATCGTTAAAACTGTGGATGGTGATGCGTCTCTACGGATTGGAAGGTCTGCGAAATCACACGAGAAACCACATTAATCTTGCTGCTTATTTTGAGGACCTTGTTGGTCAGGATCCAAGGTTCAAGGTTGTTACGCCTCGCACGTTCTCTTTAGTCTGTTTTCGGCTTTTGCCTCCGGCTAACACAGAAGATACTAATAAACTGAACCGTGATCTACTTGACTCGGTGAATTCAACAGGAAGTGTTTTCATAACACACACGGTTCTATCAGGTCAGTTCATTCTGCGTTTTGCAGTAGGAGCACCATTGACAGAACAGAGGCATGTCGACGCAGCATGGCGAATTTTGCAAGAAAAGGCCACTGCTCTGCTTGGGAGTTTGTAG 1479 0.4354 MEGEQQSSGILRSMDAEQLREHAHKMVDFIADYYKTIESFPVLSQVQPGYLEKLLPDSAPDYPETLEHVLNDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGFNIVGFSWITSPAATELETIVLDWLAKALKLPHDFHSTGQGGGVIQGTASEAVLVVLLAARDKILRTVGKGALPKLVTYASDQTHSSLLKACQIGGLNPEFCRSLKTDASTNYALSPEVFSEAVSRDIASGLIPFFLCATVGTTSSTAIDHLPELGKIAKVKNIWFHVDAAYAGSACVCPEYQHHLNGVDEADSFNMNAHKWLLTNFDCSLLWVKDRSALIQSLSTNPEYLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVMRLYGLEGLRNHTRNHINLAAYFEDLVGQDPRFKVVTPRTFSLVCFRLLPPANTEDTNKLNRDLLDSVNSTGSVFITHTVLSGQFILRFAVGAPLTEQRHVDAAWRILQEKATALLGSL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1416 492 Gene3D - 95 387 IPR015421 GO:0003824
Ahy16g1416 492 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 14 491 - -
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 126 145 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 42 59 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 403 422 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 360 375 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 86 105 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 107 125 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 151 171 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 19 38 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 60 79 IPR010977 GO:0006520|GO:0016831
Ahy16g1416 492 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 304 325 IPR021115 GO:0016831
Ahy16g1416 492 Gene3D - 9 94 - -
Ahy16g1416 492 Gene3D Aspartate Aminotransferase, domain 1 388 492 IPR015422 GO:0003824
Ahy16g1416 492 CDD DOPA_deC_like 89 483 - -
Ahy16g1416 492 Pfam Pyridoxal-dependent decarboxylase conserved domain 48 421 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ahy16g1416 492 SUPERFAMILY PLP-dependent transferases 14 485 IPR015424 -
Ahy16g1416 492 PANTHER BNAA07G00240D PROTEIN 14 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1416 Ahy-Chr16 28980158 28983635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1416 K01593 - gmx:100791074 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1416 16 28980158 28983635 Ahy6g0054 6 790989 794525 hybridization