Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0873 ATGCCACCATTGATGGCCATTGAGTTCCTTTGTAGGGTAGCAGATGTCCTCAATGATTATCTTGGGGGTTTGAACGAAGACTTGATTAAAGACAACTTTGTCATTGTTTATGAGCTGCTGGATGAGATGATAGACAATGGCTTCCCACTAACTACGGAACCTAACATCCTGCAAGAGATGATAGCTCCACCAAATATTGTTAGTAAAGTCTTGAGTGTTGTCACTGGCACCAGTTCCAATGTGAGTGACACCCTTCCTGGTGCATCAGCTTCTGGTGTTCCCTGGAGAACAGCAGATCCAAAGTATGCCCAGAATGAAGTTTATATAGATCTTGCTGAAGAAATGGATGCTACAATAAACAGGGATGGAGCTCTGATGAAATGTGAGGTCTATGGTCAAGTTAAAGTAAATTCCCATATCAGTGGTCTTCCTGACATGACACTTTCATTTACAAATCCTTCGATCCTAGACCAAGTGAGGTTCCATCCATGTGTTAGATTTCGCCAATGGGAATCCCATCAGATTCTTTCATTTGTGCCTCCTGATGGACAATTTAAACTTATGAGTTACAGGGTTAGAAAATTGAAGAGCACCCCATTATATGTAAAGCCACAGTTGACATCGAATGGTGGGACATGCCGTCTTAATGTAATGGTTGGTTCAAGAAATAATCATGGAAAGACTATTGATTTAGTTACAGTTCAGTTTCAGCTTCCTTCATGCATTTTATCTGCAGATCTTACCTCAAATCATGGAACAGTAAACATCCTTGCTGACAAGACATGCAATTGGAACATTGGTCGGATCCCAAAAGATAAAGCCCCTTCAATGTCTGGAACGTTGGTGCTTGAGACTGGATTGGAGCGTCTTCACACCTTCCCCACATTTAGAGTGGGTTTTAAGATGATGGGTGTTGCTCTCTCTGGCCTGAAAATAGATAAACTGGATTTGAAAACTGTTCCTTACCGTTTCTTCAAAGGTTTTCGAGCTGTTAGCCGTGCAGGTGAATTTGAAGTCAGATCATAA 1026 0.4152 MPPLMAIEFLCRVADVLNDYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGTSSNVSDTLPGASASGVPWRTADPKYAQNEVYIDLAEEMDATINRDGALMKCEVYGQVKVNSHISGLPDMTLSFTNPSILDQVRFHPCVRFRQWESHQILSFVPPDGQFKLMSYRVRKLKSTPLYVKPQLTSNGGTCRLNVMVGSRNNHGKTIDLVTVQFQLPSCILSADLTSNHGTVNILADKTCNWNIGRIPKDKAPSMSGTLVLETGLERLHTFPTFRVGFKMMGVALSGLKIDKLDLKTVPYRFFKGFRAVSRAGEFEVRS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0873 341 PANTHER AP COMPLEX SUBUNIT MU 2 340 - -
Ahy16g0873 341 Gene3D - 1 69 - -
Ahy16g0873 341 PRINTS Clathrin coat assembly protein signature 26 53 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ahy16g0873 341 PRINTS Clathrin coat assembly protein signature 156 183 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ahy16g0873 341 PANTHER CARMINE, ISOFORM A 2 340 - -
Ahy16g0873 341 PIRSF AP_complex_mu 1 341 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ahy16g0873 341 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 93 340 IPR036168 -
Ahy16g0873 341 Pfam Adaptor complexes medium subunit family 93 340 IPR028565 -
Ahy16g0873 341 CDD AP3_Mu_N 1 68 - -
Ahy16g0873 341 CDD AP-3_Mu3_Cterm 93 340 - -
Ahy16g0873 341 Gene3D Mu homology domain, subdomain B 93 336 - -
Ahy16g0873 341 ProSiteProfiles Mu homology domain (MHD) profile. 104 340 IPR028565 -
Ahy16g0873 341 SUPERFAMILY SNARE-like 2 68 IPR011012 -
Ahy16g0873 341 Gene3D Mu homology domain, subdomain B 198 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0873 Ahy-Chr16 15666657 15668898 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0873 K12398 - gmx:100799191 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0873 16 15666657 15668898 Ahy16g0873 16 15666657 15668898 ECH
Ahy16g0873 16 15666657 15668898 Ahy6g0486 6 5927004 5929198 hybridization