Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0586 ATGAGCAGCTTAATGGCGAGCTTCACAGCTCGCATCTCTGCTTACACCAACCACCTTTTCCCCATACGACGTCGTCCCCTTCATAACAGACGCCTCACTCTTTTTCCCAACACCACCACACTCAGACCTCACACACTAAGAATCACCTGCATGGCGGAACCTTATCTCATAACGAAGCTGGAATCTGCTGAGAAGACCTGGCAAGAATTATCGGTTAAGCTTGCTGACCCTGACGTTGTGTCTAATCCGAGTGAGTACCAAAAATTGGCACAATCAGTGGCAGAGCTTGATGAGGTTGTGTCCACGTATAGGAGGTTTAAAGAGTGTGAAAAGGCTCTGGAAGAAACGAAAGCTTTGGCAAAGGATGATGAAAATGAGGAGGATATGGTTGAAATGATATCTTCAGAAATAGACTCTTTGTCAAGGCAAATCGCAGAGCTTGAGGATAAGCTCAAGGTTTTATTGCTTCCCAGTGATCCTCTTGATGCAAGAAACATAATGCTTGAAGTACGAGCAGGTACTGGTGGTGATGAGGCTGGAATATGGGCTGGTGATCTTGTTCGGATGTATGAAAAATACAGTGAGCTGAATTCTTGGAAGTATTCTGTTATCTCAAGCTCTCCGGCAGAGAAAGGAGGGTACAAAACTTATGTGATGGAGATAAAAGGAAAACGTGTCTACAGTAAATTAAAATATGAATCTGGTGTCCATCGAGTTCAACGTGTTCCTCTAACAGAGACACAGGGTCGTGTACATACTTCTACTGCAACAGTGGCAATCATGCCAGAGGCTGATGAAGTTGAAGTAGTAATCGACCCAAAAGATATTGAACTTACTACAGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCCATTGATCTTTTTCACAAACCAACGGGAATCCGTATCTTTTGTACTGAAGAAAGGACTCAACTTCAGAACAAGAATCGCGCTTTTCAATTGCTCCGTGCAAAACTATACGAGATGAAGGTAAGGGAGCAGCAAGAGTCAATTCGAAATCAAAGGAAATCACAGGTTGGTACAGGTGCACGTGCAGAAAAAATTCGGACATATAATTTCAAGGACAACAGGGTTACTGACCACAGATTGAAGATGAACTTTGAGCTCACCTCCTTTCTTAATGGTAACATAGAAGATGCTGTTCAGTCTTGTGTTACAACGGAGCAGAAGGAGCTCTTGGAAGAACTTGCTGAATCTGTAGGTGCTCCTGCTGGCTGA 1257 0.4391 MSSLMASFTARISAYTNHLFPIRRRPLHNRRLTLFPNTTTLRPHTLRITCMAEPYLITKLESAEKTWQELSVKLADPDVVSNPSEYQKLAQSVAELDEVVSTYRRFKECEKALEETKALAKDDENEEDMVEMISSEIDSLSRQIAELEDKLKVLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYEKYSELNSWKYSVISSSPAEKGGYKTYVMEIKGKRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKNRAFQLLRAKLYEMKVREQQESIRNQRKSQVGTGARAEKIRTYNFKDNRVTDHRLKMNFELTSFLNGNIEDAVQSCVTTEQKELLEELAESVGAPAG* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0586 418 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 7 416 - -
Ahy16g0586 418 Coils Coil 106 126 - -
Ahy16g0586 418 Gene3D - 49 160 - -
Ahy16g0586 418 Coils Coil 130 150 - -
Ahy16g0586 418 PANTHER LD18447P 7 416 - -
Ahy16g0586 418 SMART PCRF_a_2 118 233 IPR005139 GO:0006415
Ahy16g0586 418 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 282 298 IPR000352 GO:0003747|GO:0006415
Ahy16g0586 418 Pfam RF-1 domain 265 375 IPR000352 GO:0003747|GO:0006415
Ahy16g0586 418 Gene3D - 162 271 - -
Ahy16g0586 418 Gene3D - 332 416 - -
Ahy16g0586 418 Pfam PCRF domain 64 258 IPR005139 GO:0006415
Ahy16g0586 418 TIGRFAM prfA: peptide chain release factor 1 52 411 IPR004373 GO:0006415|GO:0016149
Ahy16g0586 418 Hamap Peptide chain release factor 1 [prfA]. 56 410 IPR004373 GO:0006415|GO:0016149
Ahy16g0586 418 Gene3D - 272 331 - -
Ahy16g0586 418 SUPERFAMILY Release factor 65 406 IPR045853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0586 Ahy-Chr16 11083197 11088008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0586 K02835 - gmx:100805037 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0586 16 11083197 11088008 Ahy16g0586 16 11083197 11088008 ECH
Ahy16g0586 16 11083197 11088008 Ahy6g0711 6 8698589 8703565 hybridization