Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0540 ATGATGCTCAGAATCAGAAGCCGCGACGGCCTCGAGCGAGTAGCAGTGGAAAACCCTCACGCGACAGTTTCTCAACTTAAATCGATTATTCAAACACAACTTGGAATTCCGGTGGAGAATCAAACGCTCTCTACCAATCAGAACCTTCTTCTTTCCAAGTCTCTAGAAGATCTCGTTCGATTCACCGACATGACTAACCCCGACGCTACTCTCTCCTCCCTCGGCGTCTCCCACGGCTCAATCCTCTTCCTCTCCTACGCCGGCGACCGCCGCGGCGTCCCCGGCCCTCCCGCCGCCTTCAGTCCCGCCGGCTCCTTTGGCCGCAAGATGACTATGGATGACCTAATCGCCAAGCAGATGCGCGTCACGCGCCAGGAGCAACCGCACTGCGAGCTCGTCTCGTTCGATCGTGATTGCGCCAACGCGTTCCAGAATTACGTCAACGAAACTCTAGCTTTTGCCGTTAAGCGCGGCGGGTTCATGTACGGCACCGTTTCGGAGGAAGGCAAAGTCGAGGTGGACTTCATCTACGAGCCGCCTCAGCAGGGTACGGAGGAGAATTTGGTAATTTTCAGGGACCCTGAGGAGGAGAAGCTTGTGGATGCTATTGCTGTGGGATTGGGGATGAGGAAGGTAGGGTTTATATTCACGCAGACGATAAGCCAGGACAAGAAGGATTATACTTTATCGAATAGGGAGGTTCTTCAGGCAGCGGAGTTTCATTCGGAGAGTGGGTTGAAGGAGTGGGTCACTGCGGTTGTGAAGTTGGAGGTGAATGAGGATAGTATGGGCGCTGATGTGCACTTTGAGGCGTTTCAGATGAGCGACATGTGTGTTAGGTTGTTTAAGGAAGGGTGGTTTGAGACGGAGATCAAGGACGACGATGATCCTAAGTTGTCTAAGATGAAGAAAGAAGTGGTTGTTGGTGTTAAGGATACTAAAGAAGTTGACAATGATTTCTTCCTTGTGGTTGTTAAAATCTTTGATCATCAGGGTCCTCTTACATCAACATTTCCCATTGAGAACCGAAATAATCTGGTGACAATGAAGGCGCTGAAGAGTCATCTTGATCGGTCAAAAAACCTTCCTTTTGTGAAGCGAATTTCGGATTTTCATCTCCTTCTTGTATTGGCAAGGGTTTTGGACCTGGCTGCCGATGTTCCCGCACTGACAGAATGTGTGCAGACCCAGACTTCGGTACCGGAAGGCTACCAGATCCTTATTGAGTCCATGGCCAGTGCTGCTTGA 1248 0.5064 MMLRIRSRDGLERVAVENPHATVSQLKSIIQTQLGIPVENQTLSTNQNLLLSKSLEDLVRFTDMTNPDATLSSLGVSHGSILFLSYAGDRRGVPGPPAAFSPAGSFGRKMTMDDLIAKQMRVTRQEQPHCELVSFDRDCANAFQNYVNETLAFAVKRGGFMYGTVSEEGKVEVDFIYEPPQQGTEENLVIFRDPEEEKLVDAIAVGLGMRKVGFIFTQTISQDKKDYTLSNREVLQAAEFHSESGLKEWVTAVVKLEVNEDSMGADVHFEAFQMSDMCVRLFKEGWFETEIKDDDDPKLSKMKKEVVVGVKDTKEVDNDFFLVVVKIFDHQGPLTSTFPIENRNNLVTMKALKSHLDRSKNLPFVKRISDFHLLLVLARVLDLAADVPALTECVQTQTSVPEGYQILIESMASAA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0540 415 CDD Ubl_AtNPL4_like 1 85 - -
Ahy16g0540 415 CDD MPN_NPL4 121 377 IPR007717 -
Ahy16g0540 415 SUPERFAMILY Ubiquitin-like 1 87 IPR029071 -
Ahy16g0540 415 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 2 90 IPR016563 GO:0006511
Ahy16g0540 415 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 104 412 IPR016563 GO:0006511
Ahy16g0540 415 Gene3D - 1 99 - -
Ahy16g0540 415 Pfam Nuclear pore localisation protein NPL4 1 85 IPR024682 -
Ahy16g0540 415 ProSiteProfiles MPN domain profile. 132 274 IPR037518 -
Ahy16g0540 415 Pfam NPL4 family 159 284 IPR007717 -
Ahy16g0540 415 ProSiteProfiles Ubiquitin domain profile. 1 84 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0540 Ahy-Chr16 10158201 10161804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0540 K14015 - gmx:100779549 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0540 16 10158201 10161804 Ahy16g0540 16 10158201 10161804 ECH